paleobuddy
paleobuddy can now simulate trait-dependent diversification, not just birth-death.
Comparison · Analytics
RadialMR vs treespace
A side-by-side editorial comparison of RadialMR and treespace — release velocity, themes, recent moves, and the top alternatives to consider.
RadialMR vs treespace: at a glance
What is RadialMR?
RadialMR's 2026 release corrects degrees of freedom that had been wrong since documentation.
RadialMR implements radial-plot formulations of IVW and MR-Egger Mendelian randomization, with outlier detection and interactive plotting. The recent history is thin on features and increasingly focused on the arithmetic: 1.2.4 in July 2026 fixes the degrees of freedom returned by egger_radial() to the documented n-2, corrects the heterogeneity p-value that inherited the same error, and repairs a negated lower bound in the random-effects bootstrap standard error search interval in ivw_radial().
What is treespace?
treespace ships once every year or two, and only when CRAN or a user forces it.
treespace explores and compares sets of phylogenetic and transmission trees, including the tree-distance measures used in outbreak reconstruction. Its release history is entirely reactive: five updates across five years, each triggered by a CRAN policy change, an upstream package removal, or a bug someone reported. The most recent is an Rd cross-reference format patch plus a maintainer email change.
RadialMR vs treespace: editorial side-by-side
RadialMR
0.0ANALYTICS
RadialMR's 2026 release corrects degrees of freedom that had been wrong since documentation.
◆ Current state
RadialMR implements radial-plot formulations of IVW and MR-Egger Mendelian randomization, with outlier detection and interactive plotting. The recent history is thin on features and increasingly focused on the arithmetic: 1.2.4 in July 2026 fixes the degrees of freedom returned by egger_radial() to the documented n-2, corrects the heterogeneity p-value that inherited the same error, and repairs a negated lower bound in the random-effects bootstrap standard error search interval in ivw_radial().
◆ Where it's heading
This is a package being read closely by its maintainer rather than extended. The 1.2.x line pairs statistical corrections with defensive hardening — an rmr_format class check so unformatted input fails with a clear message, and plotly_radial() dispatching on object class instead of counting list elements. Both are the kind of change made while auditing, not while building.
◆ Prediction
Expect the audit to continue into the remaining estimator internals and print methods rather than new radial variants; the entries show no feature work queued.
treespace
0.0ANALYTICS
treespace ships once every year or two, and only when CRAN or a user forces it.
◆ Current state
treespace explores and compares sets of phylogenetic and transmission trees, including the tree-distance measures used in outbreak reconstruction. Its release history is entirely reactive: five updates across five years, each triggered by a CRAN policy change, an upstream package removal, or a bug someone reported. The most recent is an Rd cross-reference format patch plus a maintainer email change.
◆ Where it's heading
The package is stable and lightly staffed rather than abandoned — bugs that affect correctness do get fixed, and CRAN deadlines are met. But the 2023 update is the telling one: rather than vendor or replace adephylo when it faced removal, the maintainers disabled two tree-vector methods and marked the loss as hopefully temporary. Two years on, nothing in the feed indicates they came back.
◆ Prediction
The next entry will most likely be another CRAN-compliance patch, on the pattern of four of the last five releases. Whether the Abouheif and sumDD methods ever return is not something these entries give any signal on.
Alternatives to RadialMR and treespace
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either RadialMR or treespace.
geodist
geodist stays dependency-free and fast, and warns you when 'cheap' distances stop being honest.
errors
errors keeps making uncertainty print the way each scientific field expects.
CMAQ
CMAQ went global in v5.5, and has been patching that surface ever since.
enpls
enpls has not changed its statistics since 2016 — only its website, twice.
grex
grex is a lookup table with a version number — it ships when the annotation moves.
See all RadialMR alternatives → · See all treespace alternatives →
Recent activity from RadialMR and treespace
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 1mo agoRadialMRegger_radial() degrees of freedom corrected to n-2
- 3mo agoRadialMRroxygen2 bumped; package-level helpfile added
- 4mo agoRadialMRUnspecified codebase optimizations
- 11mo agotreespacetreespace patches Rd cross-references for CRAN
- 1y agoRadialMRggplot2 v4 warning removed from plot_radial()
- 2y agotreespacetreespace disables Abouheif and sumDD as adephylo exits CRAN
- 3y agotreespacetreespace fixes vignette build on NA tree names
- 5y agotreespacetreespace fixes dist indexing that broke its tests
- 5y agotreespacetreespace corrects tip label handling in transmission distances
Frequently asked questions
What is the difference between RadialMR and treespace?
They serve adjacent needs but don't currently overlap on shipped themes. RadialMR and treespace are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is RadialMR better than treespace?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. RadialMR and treespace are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to RadialMR?
Top RadialMR alternatives in Analytics are ranked by recent ship velocity. Browse the "RadialMR alternatives" section above for the current picks, or visit /alternatives/radialmr for the full list with editorial commentary on each.
What are the best alternatives to treespace?
Top treespace alternatives in Analytics are ranked by recent ship velocity. Browse the "treespace alternatives" section above for the current picks, or visit /alternatives/treespace-r for the full list with editorial commentary on each.