simlandr
Potential landscape tooling settling onto standard R generics after two rounds of renaming.
Comparison · Analytics
qtl2fst vs vinereg
A side-by-side editorial comparison of qtl2fst and vinereg — release velocity, themes, recent moves, and the top alternatives to consider.
Shared themes:r-package
qtl2fst vs vinereg: at a glance
What is qtl2fst?
The out-of-memory backend for R/qtl2, feature-complete since 2020 and now purely on upkeep
qtl2fst backs R/qtl2 genotype probabilities with on-disk fst files so large crosses don't have to fit in RAM. Its defining release was 0.22 in 2020, which added calc_genoprob_fst() and genoprob_to_alleleprob_fst() to fuse calculation and storage in one step. The five releases since are documentation links, directory-creation robustness, a Windows example fix, and — in 0.32 — a change to how cores=0 is interpreted.
What is vinereg?
Conditional density and log-likelihood fill out a vine copula regression package.
vinereg fits D-vine copula-based regression models on top of rvinecopulib and kde1d, in Thomas Nagler's package stack. The January 2025 pair - 0.10.0 and 0.11.0 tagged the same day - adds a pdf() function and then fixes conditional density computation for discrete variables while requiring the newer kde1d. Release notes run to one or two bullets each.
qtl2fst vs vinereg: editorial side-by-side
qtl2fst
0.0ANALYTICS
The out-of-memory backend for R/qtl2, feature-complete since 2020 and now purely on upkeep
◆ Current state
qtl2fst backs R/qtl2 genotype probabilities with on-disk fst files so large crosses don't have to fit in RAM. Its defining release was 0.22 in 2020, which added calc_genoprob_fst() and genoprob_to_alleleprob_fst() to fuse calculation and storage in one step. The five releases since are documentation links, directory-creation robustness, a Windows example fix, and — in 0.32 — a change to how cores=0 is interpreted.
◆ Where it's heading
The package has settled into the role of a stable satellite of R/qtl2: it tracks the parent package's conventions rather than setting its own. The cores=0 change in 0.32 arrived alongside the identical change in qtl2convert, so the parallel-computing default is being standardized across the maintainer's packages at once. Release intervals have stretched from months to years.
◆ Prediction
Further releases will most likely mirror changes originating in R/qtl2 or CRAN checks, in the same follow-the-parent pattern as 0.24 and 0.32.
vinereg
0.0ANALYTICS
Conditional density and log-likelihood fill out a vine copula regression package.
◆ Current state
vinereg fits D-vine copula-based regression models on top of rvinecopulib and kde1d, in Thomas Nagler's package stack. The January 2025 pair - 0.10.0 and 0.11.0 tagged the same day - adds a pdf() function and then fixes conditional density computation for discrete variables while requiring the newer kde1d. Release notes run to one or two bullets each.
◆ Where it's heading
Work has concentrated on evaluation rather than fitting: cll() in 0.9.0, pdf() in 0.10.0, and the discrete-variable correction in 0.11.0 all concern what can be computed from a model already fitted. Releases arrive in same-day pairs, and the notes are terse enough that 0.10.0 reuses 0.9.0's wording verbatim, describing pdf() with cll()'s sentence. Version floors also track the sibling packages - kde1d here, rvinecopulib in 0.8.3.
◆ Prediction
Given the shared release rhythm across the stack, the next entry is as likely to be a dependency-driven bump as a new function; the discrete-variable path is the one area these notes show as recently unstable.
Alternatives to qtl2fst and vinereg
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either qtl2fst or vinereg.
lavaanExtra
SEM reporting helpers converging on APA output, one CRAN resubmission at a time.
ibis.iSDM
A raster-to-terra migration is the only readable change in a feed of merge notes.
anyflights
A nycflights13 generator whose recent work is all about the data being right.
stringx
A drop-in string API for base R, kept alive by upstream check failures.
healthyR.data
From a bundled hospital dataset to a live CMS API client.
See all qtl2fst alternatives → · See all vinereg alternatives →
Recent activity from qtl2fst and vinereg
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 1mo agoqtl2fstcores=0 now leaves one core free instead of taking all
- 1y agovineregDiscrete conditional densities fixed; kde1d 1.1.0 required
- 1y agovineregpdf() added for conditional density
- 1y agoqtl2fstWindows fix for the replace_path() example
- 2y agoqtl2fstDocumentation link fix
- 2y agovineregBoost compile flag and a weights error fixed
- 2y agovineregcll() computes conditional log-likelihood
- 4y agovineregvinecopulib floor raised for RcppThread compatibility
- 4y agovineregcpit() fixed and external marginals allowed via uscale
- 4y agoqtl2fstCreates missing directories instead of erroring out
- 5y agoqtl2fstTest coverage for qtl2 functions against fst-backed probabilities
- 6y agoqtl2fstDocumentation and metadata cleanup for CRAN
Frequently asked questions
What is the difference between qtl2fst and vinereg?
Both compete on the same themes — r-package — within Analytics. qtl2fst and vinereg are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is qtl2fst better than vinereg?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. qtl2fst and vinereg are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to qtl2fst?
Top qtl2fst alternatives in Analytics are ranked by recent ship velocity. Browse the "qtl2fst alternatives" section above for the current picks, or visit /alternatives/qtl2fst for the full list with editorial commentary on each.
What are the best alternatives to vinereg?
Top vinereg alternatives in Analytics are ranked by recent ship velocity. Browse the "vinereg alternatives" section above for the current picks, or visit /alternatives/vinereg for the full list with editorial commentary on each.