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Comparison · Analytics
qtl2fst vs simlandr
A side-by-side editorial comparison of qtl2fst and simlandr — release velocity, themes, recent moves, and the top alternatives to consider.
Shared themes:r-package
qtl2fst vs simlandr: at a glance
What is qtl2fst?
The out-of-memory backend for R/qtl2, feature-complete since 2020 and now purely on upkeep
qtl2fst backs R/qtl2 genotype probabilities with on-disk fst files so large crosses don't have to fit in RAM. Its defining release was 0.22 in 2020, which added calc_genoprob_fst() and genoprob_to_alleleprob_fst() to fuse calculation and storage in one step. The five releases since are documentation links, directory-creation robustness, a Windows example fix, and — in 0.32 — a change to how cores=0 is interpreted.
What is simlandr?
Potential landscape tooling settling onto standard R generics after two rounds of renaming.
simlandr builds potential landscape plots from simulations of dynamic systems, with barrier-height calculations and batch simulation grids. Its three substantive releases are all consolidation: parameters renamed, functions renamed, defaults removed. By 0.3.0 the bespoke accessors had been replaced by ggplot2's autolayer() and base summary(), and the package carried print, summary, and plot methods for its own classes.
qtl2fst vs simlandr: editorial side-by-side
qtl2fst
0.0ANALYTICS
The out-of-memory backend for R/qtl2, feature-complete since 2020 and now purely on upkeep
◆ Current state
qtl2fst backs R/qtl2 genotype probabilities with on-disk fst files so large crosses don't have to fit in RAM. Its defining release was 0.22 in 2020, which added calc_genoprob_fst() and genoprob_to_alleleprob_fst() to fuse calculation and storage in one step. The five releases since are documentation links, directory-creation robustness, a Windows example fix, and — in 0.32 — a change to how cores=0 is interpreted.
◆ Where it's heading
The package has settled into the role of a stable satellite of R/qtl2: it tracks the parent package's conventions rather than setting its own. The cores=0 change in 0.32 arrived alongside the identical change in qtl2convert, so the parallel-computing default is being standardized across the maintainer's packages at once. Release intervals have stretched from months to years.
◆ Prediction
Further releases will most likely mirror changes originating in R/qtl2 or CRAN checks, in the same follow-the-parent pattern as 0.24 and 0.32.
simlandr
0.0ANALYTICS
Potential landscape tooling settling onto standard R generics after two rounds of renaming.
◆ Current state
simlandr builds potential landscape plots from simulations of dynamic systems, with barrier-height calculations and batch simulation grids. Its three substantive releases are all consolidation: parameters renamed, functions renamed, defaults removed. By 0.3.0 the bespoke accessors had been replaced by ggplot2's autolayer() and base summary(), and the package carried print, summary, and plot methods for its own classes.
◆ Where it's heading
Every release trades a package-specific name for a conventional one - var and par became arg and ele, get_geom() became an autolayer() method, get_barrier_height() became a summary() method, hash_big.matrix became hash_big_matrix. The one methodological change, an adjusted minimal energy path algorithm, arrived inside a release otherwise full of renames. Removing default values for barrier calculation because they were often unsuitable reads as the maintainer deciding the defaults were doing harm.
◆ Prediction
The feed stops at 0.3.0 in late 2022, mid-consolidation; these entries give no indication of what followed, if anything did.
Alternatives to qtl2fst and simlandr
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either qtl2fst or simlandr.
ibis.iSDM
A raster-to-terra migration is the only readable change in a feed of merge notes.
anyflights
A nycflights13 generator whose recent work is all about the data being right.
vinereg
Conditional density and log-likelihood fill out a vine copula regression package.
stringx
A drop-in string API for base R, kept alive by upstream check failures.
healthyR.data
From a bundled hospital dataset to a live CMS API client.
See all qtl2fst alternatives → · See all simlandr alternatives →
Recent activity from qtl2fst and simlandr
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 1mo agoqtl2fstcores=0 now leaves one core free instead of taking all
- 1y agoqtl2fstWindows fix for the replace_path() example
- 2y agoqtl2fstDocumentation link fix
- 3y agosimlandrAccessors replaced by autolayer and summary methods
- 3y agosimlandrroxygen2 updated for HTML5 compatibility
- 4y agosimlandrBatch simulation arguments renamed; energy path algorithm adjusted
- 4y agosimlandrManual improved and a test function added
- 4y agoqtl2fstCreates missing directories instead of erroring out
- 5y agosimlandrPackage cleaned for CRAN compatibility
- 5y agoqtl2fstTest coverage for qtl2 functions against fst-backed probabilities
- 6y agoqtl2fstDocumentation and metadata cleanup for CRAN
Frequently asked questions
What is the difference between qtl2fst and simlandr?
Both compete on the same themes — r-package — within Analytics. qtl2fst and simlandr are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is qtl2fst better than simlandr?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. qtl2fst and simlandr are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to qtl2fst?
Top qtl2fst alternatives in Analytics are ranked by recent ship velocity. Browse the "qtl2fst alternatives" section above for the current picks, or visit /alternatives/qtl2fst for the full list with editorial commentary on each.
What are the best alternatives to simlandr?
Top simlandr alternatives in Analytics are ranked by recent ship velocity. Browse the "simlandr alternatives" section above for the current picks, or visit /alternatives/simlandr for the full list with editorial commentary on each.