nflreadr
The nflverse data loader, whose releases are dictated by the NFL calendar and CRAN's archive policy
Comparison · Analytics
qtl2fst vs scimesh
A side-by-side editorial comparison of qtl2fst and scimesh — release velocity, themes, recent moves, and the top alternatives to consider.
qtl2fst vs scimesh: at a glance
What is qtl2fst?
The out-of-memory backend for R/qtl2, feature-complete since 2020 and now purely on upkeep
qtl2fst backs R/qtl2 genotype probabilities with on-disk fst files so large crosses don't have to fit in RAM. Its defining release was 0.22 in 2020, which added calc_genoprob_fst() and genoprob_to_alleleprob_fst() to fuse calculation and storage in one step. The five releases since are documentation links, directory-creation robustness, a Windows example fix, and — in 0.32 — a change to how cores=0 is interpreted.
What is scimesh?
A C++ mesh renderer grinding through CRAN's gate, one policy fix at a time
scimesh is a C++ scientific mesh rendering library with an R binding, released in tight bursts by the dfsp-spirit neuroimaging group. The last month is dominated by CRAN admission work: stripped debug symbols, assert removal in vendored third-party code, vignette index fixes. Around that compliance grind sit genuine additions — an rgl-to-scimesh auto-conversion path, a camera_orbit helper for video, contrast as a render option.
qtl2fst vs scimesh: editorial side-by-side
qtl2fst
0.0ANALYTICS
The out-of-memory backend for R/qtl2, feature-complete since 2020 and now purely on upkeep
◆ Current state
qtl2fst backs R/qtl2 genotype probabilities with on-disk fst files so large crosses don't have to fit in RAM. Its defining release was 0.22 in 2020, which added calc_genoprob_fst() and genoprob_to_alleleprob_fst() to fuse calculation and storage in one step. The five releases since are documentation links, directory-creation robustness, a Windows example fix, and — in 0.32 — a change to how cores=0 is interpreted.
◆ Where it's heading
The package has settled into the role of a stable satellite of R/qtl2: it tracks the parent package's conventions rather than setting its own. The cores=0 change in 0.32 arrived alongside the identical change in qtl2convert, so the parallel-computing default is being standardized across the maintainer's packages at once. Release intervals have stretched from months to years.
◆ Prediction
Further releases will most likely mirror changes originating in R/qtl2 or CRAN checks, in the same follow-the-parent pattern as 0.24 and 0.32.
scimesh
5.0ANALYTICS
A C++ mesh renderer grinding through CRAN's gate, one policy fix at a time
◆ Current state
scimesh is a C++ scientific mesh rendering library with an R binding, released in tight bursts by the dfsp-spirit neuroimaging group. The last month is dominated by CRAN admission work: stripped debug symbols, assert removal in vendored third-party code, vignette index fixes. Around that compliance grind sit genuine additions — an rgl-to-scimesh auto-conversion path, a camera_orbit helper for video, contrast as a render option.
◆ Where it's heading
The tag stream is non-monotonic — 0.2.5, 0.2.3 and 0.2.6 land within 40 seconds of each other, and 0.2.8 precedes nothing — so version order here says nothing about what shipped when. Read as a whole, the arc is a C++ codebase being domesticated for R distribution: the rendering features are largely settled, and the effort has moved to making an >5MB-adjacent C++ package survive R CMD check --as-cran. The R vignette has been restructured twice in three weeks.
◆ Prediction
Expect continued CRAN-review round-trips at 0.3.x until acceptance, with feature work confined to the CLI renderer examples rather than the core library.
Alternatives to qtl2fst and scimesh
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either qtl2fst or scimesh.
susier
Fine-mapping workhorse susieR spends its releases hunting null-effect trimming bugs
UCell
A rank-based gene signature scorer that has grown by adapting to whatever object format single-cell R uses next
detectseparation
A diagnostic package that generalized past its own name, then learned to say which kind of separation it found
brglm2
A bias-reduction package reaches 1.0 by adding an estimator built for high-dimensional logistic regression
bayestools
The JAGS toolkit under RoBMA, shipping the standardization machinery its downstream rewrite needed
See all qtl2fst alternatives → · See all scimesh alternatives →
Recent activity from qtl2fst and scimesh
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 4d agoscimeshVersion 0.3.2 -- CRAN review fixes
- 18d agoscimeshVersion 0.2.8 -- Changes for CRAN submission only
- 18d agoscimeshVersion 0.2.7 -- Small improvements
- 1mo agoqtl2fstcores=0 now leaves one core free instead of taking all
- 1mo agoscimeshVersion 0.2.5 -- Fix CRAN checks
- 1mo agoscimeshVersion 0.2.3 -- Convenience Image Ops
- 1mo agoscimeshVersion 0.2.6 -- Add contrast render option
- 1y agoqtl2fstWindows fix for the replace_path() example
- 2y agoqtl2fstDocumentation link fix
- 4y agoqtl2fstCreates missing directories instead of erroring out
- 5y agoqtl2fstTest coverage for qtl2 functions against fst-backed probabilities
- 6y agoqtl2fstDocumentation and metadata cleanup for CRAN
Frequently asked questions
What is the difference between qtl2fst and scimesh?
They serve adjacent needs but don't currently overlap on shipped themes. scimesh is currently shipping more aggressively (velocity 5.0 vs 0.0), with 0 editorial sparks in the last 30 days against 0. See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is qtl2fst better than scimesh?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. scimesh is currently shipping more aggressively (velocity 5.0 vs 0.0), with 0 editorial sparks in the last 30 days against 0. For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to qtl2fst?
Top qtl2fst alternatives in Analytics are ranked by recent ship velocity. Browse the "qtl2fst alternatives" section above for the current picks, or visit /alternatives/qtl2fst for the full list with editorial commentary on each.
What are the best alternatives to scimesh?
Top scimesh alternatives in Analytics are ranked by recent ship velocity. Browse the "scimesh alternatives" section above for the current picks, or visit /alternatives/scimesh for the full list with editorial commentary on each.