simlandr
Potential landscape tooling settling onto standard R generics after two rounds of renaming.
Comparison · Analytics
qtl2convert vs vinereg
A side-by-side editorial comparison of qtl2convert and vinereg — release velocity, themes, recent moves, and the top alternatives to consider.
Shared themes:r-package
qtl2convert vs vinereg: at a glance
What is qtl2convert?
A conversion utility in pure maintenance mode, tracking R-devel breakage release by release
qtl2convert is the format-shim of the R/qtl2 ecosystem: it moves genotype probabilities and genetic maps between DOQTL, R/qtl and R/qtl2 representations. The last three releases contain no new conversion functions at all — 0.32 fixed a C string comparison flagged by CRAN, 0.34 restored attribute-clearing that R-devel 4.7 changed underneath the package, and 0.36 adjusted parallel core defaults plus a test tweak. The functional surface has been stable since 0.26 added cross2_ril_to_genril().
What is vinereg?
Conditional density and log-likelihood fill out a vine copula regression package.
vinereg fits D-vine copula-based regression models on top of rvinecopulib and kde1d, in Thomas Nagler's package stack. The January 2025 pair - 0.10.0 and 0.11.0 tagged the same day - adds a pdf() function and then fixes conditional density computation for discrete variables while requiring the newer kde1d. Release notes run to one or two bullets each.
qtl2convert vs vinereg: editorial side-by-side
qtl2convert
0.0ANALYTICS
A conversion utility in pure maintenance mode, tracking R-devel breakage release by release
◆ Current state
qtl2convert is the format-shim of the R/qtl2 ecosystem: it moves genotype probabilities and genetic maps between DOQTL, R/qtl and R/qtl2 representations. The last three releases contain no new conversion functions at all — 0.32 fixed a C string comparison flagged by CRAN, 0.34 restored attribute-clearing that R-devel 4.7 changed underneath the package, and 0.36 adjusted parallel core defaults plus a test tweak. The functional surface has been stable since 0.26 added cross2_ril_to_genril().
◆ Where it's heading
This is a package whose release cadence is driven by its dependencies, not its roadmap. Two of the last three releases exist purely because upstream R or CRAN's check suite moved; the maintainer responds within weeks and ships. The cores=0 change in 0.36 is the only user-visible behavior shift in over a year, and it landed simultaneously in sibling package qtl2fst — this is a maintainer-wide convention change, not a qtl2convert decision.
◆ Prediction
Expect the next release to be triggered by another R-devel or CRAN check change rather than a feature request, following the same pattern as 0.32 and 0.34.
vinereg
0.0ANALYTICS
Conditional density and log-likelihood fill out a vine copula regression package.
◆ Current state
vinereg fits D-vine copula-based regression models on top of rvinecopulib and kde1d, in Thomas Nagler's package stack. The January 2025 pair - 0.10.0 and 0.11.0 tagged the same day - adds a pdf() function and then fixes conditional density computation for discrete variables while requiring the newer kde1d. Release notes run to one or two bullets each.
◆ Where it's heading
Work has concentrated on evaluation rather than fitting: cll() in 0.9.0, pdf() in 0.10.0, and the discrete-variable correction in 0.11.0 all concern what can be computed from a model already fitted. Releases arrive in same-day pairs, and the notes are terse enough that 0.10.0 reuses 0.9.0's wording verbatim, describing pdf() with cll()'s sentence. Version floors also track the sibling packages - kde1d here, rvinecopulib in 0.8.3.
◆ Prediction
Given the shared release rhythm across the stack, the next entry is as likely to be a dependency-driven bump as a new function; the discrete-variable path is the one area these notes show as recently unstable.
Alternatives to qtl2convert and vinereg
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either qtl2convert or vinereg.
lavaanExtra
SEM reporting helpers converging on APA output, one CRAN resubmission at a time.
ibis.iSDM
A raster-to-terra migration is the only readable change in a feed of merge notes.
anyflights
A nycflights13 generator whose recent work is all about the data being right.
stringx
A drop-in string API for base R, kept alive by upstream check failures.
healthyR.data
From a bundled hospital dataset to a live CMS API client.
See all qtl2convert alternatives → · See all vinereg alternatives →
Recent activity from qtl2convert and vinereg
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 1mo agoqtl2convertcores=0 now leaves one core free instead of taking all
- 2mo agoqtl2convertAttribute-clearing fix for R-devel 4.7
- 3mo agoqtl2convertC string comparison fix in encode_geno()
- 1y agovineregDiscrete conditional densities fixed; kde1d 1.1.0 required
- 1y agovineregpdf() added for conditional density
- 2y agoqtl2convertBug fix in probs_doqtl_to_qtl2()
- 2y agovineregBoost compile flag and a weights error fixed
- 2y agovineregcll() computes conditional log-likelihood
- 4y agoqtl2convertMaintenance release for a NEWS.md typo
- 4y agovineregvinecopulib floor raised for RcppThread compatibility
- 4y agovineregcpit() fixed and external marginals allowed via uscale
- 4y agoqtl2convertAdds cross2_ril_to_genril() for RIL cross conversion
Frequently asked questions
What is the difference between qtl2convert and vinereg?
Both compete on the same themes — r-package — within Analytics. qtl2convert and vinereg are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is qtl2convert better than vinereg?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. qtl2convert and vinereg are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to qtl2convert?
Top qtl2convert alternatives in Analytics are ranked by recent ship velocity. Browse the "qtl2convert alternatives" section above for the current picks, or visit /alternatives/qtl2convert for the full list with editorial commentary on each.
What are the best alternatives to vinereg?
Top vinereg alternatives in Analytics are ranked by recent ship velocity. Browse the "vinereg alternatives" section above for the current picks, or visit /alternatives/vinereg for the full list with editorial commentary on each.