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qtl2convert vs simlandr

A side-by-side editorial comparison of qtl2convert and simlandr — release velocity, themes, recent moves, and the top alternatives to consider.

Shared themes:r-package

qtl2convert vs simlandr: at a glance

Featureqtl2convertsimlandr
SectorAnalyticsAnalytics
Velocity score0.00.0
Sparks · 30d00
Top themesr-package, genetics, format-conversion, cran-maintenancer-package, dynamical-systems, visualization, api-consolidation
Last editorial update6h ago1h ago
WebsiteVisit →Visit →

What is qtl2convert?

A conversion utility in pure maintenance mode, tracking R-devel breakage release by release

qtl2convert is the format-shim of the R/qtl2 ecosystem: it moves genotype probabilities and genetic maps between DOQTL, R/qtl and R/qtl2 representations. The last three releases contain no new conversion functions at all — 0.32 fixed a C string comparison flagged by CRAN, 0.34 restored attribute-clearing that R-devel 4.7 changed underneath the package, and 0.36 adjusted parallel core defaults plus a test tweak. The functional surface has been stable since 0.26 added cross2_ril_to_genril().

Read the full qtl2convert trajectory →

What is simlandr?

Potential landscape tooling settling onto standard R generics after two rounds of renaming.

simlandr builds potential landscape plots from simulations of dynamic systems, with barrier-height calculations and batch simulation grids. Its three substantive releases are all consolidation: parameters renamed, functions renamed, defaults removed. By 0.3.0 the bespoke accessors had been replaced by ggplot2's autolayer() and base summary(), and the package carried print, summary, and plot methods for its own classes.

Read the full simlandr trajectory →

qtl2convert vs simlandr: editorial side-by-side

Q
qtl2convert
ANALYTICS
0.0

A conversion utility in pure maintenance mode, tracking R-devel breakage release by release

◆ Current state

qtl2convert is the format-shim of the R/qtl2 ecosystem: it moves genotype probabilities and genetic maps between DOQTL, R/qtl and R/qtl2 representations. The last three releases contain no new conversion functions at all — 0.32 fixed a C string comparison flagged by CRAN, 0.34 restored attribute-clearing that R-devel 4.7 changed underneath the package, and 0.36 adjusted parallel core defaults plus a test tweak. The functional surface has been stable since 0.26 added cross2_ril_to_genril().

◆ Where it's heading

This is a package whose release cadence is driven by its dependencies, not its roadmap. Two of the last three releases exist purely because upstream R or CRAN's check suite moved; the maintainer responds within weeks and ships. The cores=0 change in 0.36 is the only user-visible behavior shift in over a year, and it landed simultaneously in sibling package qtl2fst — this is a maintainer-wide convention change, not a qtl2convert decision.

◆ Prediction

Expect the next release to be triggered by another R-devel or CRAN check change rather than a feature request, following the same pattern as 0.32 and 0.34.

S
simlandr
ANALYTICS
0.0

Potential landscape tooling settling onto standard R generics after two rounds of renaming.

◆ Current state

simlandr builds potential landscape plots from simulations of dynamic systems, with barrier-height calculations and batch simulation grids. Its three substantive releases are all consolidation: parameters renamed, functions renamed, defaults removed. By 0.3.0 the bespoke accessors had been replaced by ggplot2's autolayer() and base summary(), and the package carried print, summary, and plot methods for its own classes.

◆ Where it's heading

Every release trades a package-specific name for a conventional one - var and par became arg and ele, get_geom() became an autolayer() method, get_barrier_height() became a summary() method, hash_big.matrix became hash_big_matrix. The one methodological change, an adjusted minimal energy path algorithm, arrived inside a release otherwise full of renames. Removing default values for barrier calculation because they were often unsuitable reads as the maintainer deciding the defaults were doing harm.

◆ Prediction

The feed stops at 0.3.0 in late 2022, mid-consolidation; these entries give no indication of what followed, if anything did.

Alternatives to qtl2convert and simlandr

Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either qtl2convert or simlandr.

See all qtl2convert alternatives → · See all simlandr alternatives →

Recent activity from qtl2convert and simlandr

Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.

  1. 1mo agoqtl2convertcores=0 now leaves one core free instead of taking all
  2. 2mo agoqtl2convertAttribute-clearing fix for R-devel 4.7
  3. 3mo agoqtl2convertC string comparison fix in encode_geno()
  4. 2y agoqtl2convertBug fix in probs_doqtl_to_qtl2()
  5. 3y agosimlandrAccessors replaced by autolayer and summary methods
  6. 3y agosimlandrroxygen2 updated for HTML5 compatibility
  7. 4y agoqtl2convertMaintenance release for a NEWS.md typo
  8. 4y agosimlandrBatch simulation arguments renamed; energy path algorithm adjusted
  9. 4y agosimlandrManual improved and a test function added
  10. 4y agoqtl2convertAdds cross2_ril_to_genril() for RIL cross conversion
  11. 5y agosimlandrPackage cleaned for CRAN compatibility

Frequently asked questions

What is the difference between qtl2convert and simlandr?

Both compete on the same themes — r-package — within Analytics. qtl2convert and simlandr are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.

Is qtl2convert better than simlandr?

Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. qtl2convert and simlandr are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.

What are the best alternatives to qtl2convert?

Top qtl2convert alternatives in Analytics are ranked by recent ship velocity. Browse the "qtl2convert alternatives" section above for the current picks, or visit /alternatives/qtl2convert for the full list with editorial commentary on each.

What are the best alternatives to simlandr?

Top simlandr alternatives in Analytics are ranked by recent ship velocity. Browse the "simlandr alternatives" section above for the current picks, or visit /alternatives/simlandr for the full list with editorial commentary on each.