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qtl2convert vs tulpa
A side-by-side editorial comparison of qtl2convert and tulpa — release velocity, themes, recent moves, and the top alternatives to consider.
qtl2convert vs tulpa: at a glance
What is qtl2convert?
A conversion utility in pure maintenance mode, tracking R-devel breakage release by release
qtl2convert is the format-shim of the R/qtl2 ecosystem: it moves genotype probabilities and genetic maps between DOQTL, R/qtl and R/qtl2 representations. The last three releases contain no new conversion functions at all — 0.32 fixed a C string comparison flagged by CRAN, 0.34 restored attribute-clearing that R-devel 4.7 changed underneath the package, and 0.36 adjusted parallel core defaults plus a test tweak. The functional surface has been stable since 0.26 added cross2_ril_to_genril().
What is tulpa?
The 0.0.x train stops at CRAN: tulpa's engine ships to the ecosystem it already anchors.
tulpa is the C++/R Bayesian spatial inference engine sitting under gcol33's family of ecological occupancy packages, tagging 0.0.x releases several times a week. 0.1.0 is its first CRAN release, and the notes state outright that the engine surface is unchanged from 0.0.198 — the work is packaging discipline: local T bindings rebound to n_t/n_times, OpenMP teams capped under R CMD check, the pkgdown deploy narrowed, an aspell dictionary added. The window behind it splits between the S3 generics conversion and numerical-correctness work in the nested-Laplace grid.
qtl2convert vs tulpa: editorial side-by-side
qtl2convert
0.0ANALYTICS
A conversion utility in pure maintenance mode, tracking R-devel breakage release by release
◆ Current state
qtl2convert is the format-shim of the R/qtl2 ecosystem: it moves genotype probabilities and genetic maps between DOQTL, R/qtl and R/qtl2 representations. The last three releases contain no new conversion functions at all — 0.32 fixed a C string comparison flagged by CRAN, 0.34 restored attribute-clearing that R-devel 4.7 changed underneath the package, and 0.36 adjusted parallel core defaults plus a test tweak. The functional surface has been stable since 0.26 added cross2_ril_to_genril().
◆ Where it's heading
This is a package whose release cadence is driven by its dependencies, not its roadmap. Two of the last three releases exist purely because upstream R or CRAN's check suite moved; the maintainer responds within weeks and ships. The cores=0 change in 0.36 is the only user-visible behavior shift in over a year, and it landed simultaneously in sibling package qtl2fst — this is a maintainer-wide convention change, not a qtl2convert decision.
◆ Prediction
Expect the next release to be triggered by another R-devel or CRAN check change rather than a feature request, following the same pattern as 0.32 and 0.34.
tulpa
7.5ANALYTICS
The 0.0.x train stops at CRAN: tulpa's engine ships to the ecosystem it already anchors.
◆ Current state
tulpa is the C++/R Bayesian spatial inference engine sitting under gcol33's family of ecological occupancy packages, tagging 0.0.x releases several times a week. 0.1.0 is its first CRAN release, and the notes state outright that the engine surface is unchanged from 0.0.198 — the work is packaging discipline: local T bindings rebound to n_t/n_times, OpenMP teams capped under R CMD check, the pkgdown deploy narrowed, an aspell dictionary added. The window behind it splits between the S3 generics conversion and numerical-correctness work in the nested-Laplace grid.
◆ Where it's heading
Two moves in nine days point at the same destination: the generics conversion made tulpa extensible by downstream packages, and CRAN admission makes it installable by them. The current cadence — several tags a week, some existing only to record a measurement that produced no code change — does not survive CRAN's submission overhead, so the release rhythm has to slow whether or not the project intends it. The correctness work still clusters on the joint nested-Laplace driver, and 0.1.0 extends the same diagnostics habit with .NL_AXIS_SD_REASONS, a closed vocabulary for an outer axis whose grid does not contain its own posterior mode.
◆ Prediction
Expect tulpaObs to follow tulpa onto CRAN, since it is the consumer whose registrations the engine has spent this window unblocking, and expect the version line to move in larger, less frequent steps now that each one carries a submission.
Alternatives to qtl2convert and tulpa
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either qtl2convert or tulpa.
Fulcrum
Fulcrum is betting its whole map stack on Esri, with a hard Google Maps cutoff on September 1.
Holistics
Holistics keeps fencing in the AI layer it spent the summer building.
Dovetail
Dovetail spent July opening doors to other tools and August making its own rooms easier to enter.
AgencyAnalytics
AgencyAI got skills three weeks ago; everything since has been making them routine.
NocoDB
Interfaces gets the permissions layer it needed, one release after launching.
See all qtl2convert alternatives → · See all tulpa alternatives →
Recent activity from qtl2convert and tulpa
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 18h agotulpaFirst CRAN release: engine surface unchanged from 0.0.198 ⚡
- 4d agotulpatulpa_re_aghq() exposes the mode/theta cross-Hessian
- 8d agotulpaDense batched joint path could silently drop a grid cell
- 8d agotulpaCalibration and goodness-of-fit entry points become S3 generics ⚡
- 9d agotulpaCUDA backend had two definitions; link order decided if it ran
- 9d agotulpaHyperparameter bounds now flag when they leave the node range
- 1mo agoqtl2convertcores=0 now leaves one core free instead of taking all
- 2mo agoqtl2convertAttribute-clearing fix for R-devel 4.7
- 3mo agoqtl2convertC string comparison fix in encode_geno()
- 2y agoqtl2convertBug fix in probs_doqtl_to_qtl2()
- 4y agoqtl2convertMaintenance release for a NEWS.md typo
- 4y agoqtl2convertAdds cross2_ril_to_genril() for RIL cross conversion
Frequently asked questions
What is the difference between qtl2convert and tulpa?
They serve adjacent needs but don't currently overlap on shipped themes. tulpa is currently shipping more aggressively (velocity 7.5 vs 0.0), with 2 editorial sparks in the last 30 days against 0. See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is qtl2convert better than tulpa?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. tulpa is currently shipping more aggressively (velocity 7.5 vs 0.0), with 2 editorial sparks in the last 30 days against 0. For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to qtl2convert?
Top qtl2convert alternatives in Analytics are ranked by recent ship velocity. Browse the "qtl2convert alternatives" section above for the current picks, or visit /alternatives/qtl2convert for the full list with editorial commentary on each.
What are the best alternatives to tulpa?
Top tulpa alternatives in Analytics are ranked by recent ship velocity. Browse the "tulpa alternatives" section above for the current picks, or visit /alternatives/tulpa for the full list with editorial commentary on each.