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Comparison · Analytics
qtl2convert vs robma
A side-by-side editorial comparison of qtl2convert and robma — release velocity, themes, recent moves, and the top alternatives to consider.
Shared themes:r-package
qtl2convert vs robma: at a glance
What is qtl2convert?
A conversion utility in pure maintenance mode, tracking R-devel breakage release by release
qtl2convert is the format-shim of the R/qtl2 ecosystem: it moves genotype probabilities and genetic maps between DOQTL, R/qtl and R/qtl2 representations. The last three releases contain no new conversion functions at all — 0.32 fixed a C string comparison flagged by CRAN, 0.34 restored attribute-clearing that R-devel 4.7 changed underneath the package, and 0.36 adjusted parallel core defaults plus a test tweak. The functional surface has been stable since 0.26 added cross2_ril_to_genril().
What is robma?
RoBMA 4.0 tears out its own constructor surface and rebuilds on one class hierarchy
RoBMA fits robust Bayesian model-averaged meta-analyses that adjust for publication bias. The 3.x line grew by accretion: separate constructors for each model family (RoBMA.reg, NoBMA, BiBMA and their .reg variants), a spike-and-slab algorithm in 3.3.0 that made estimation fast enough to matter, then a steady stream of post-estimation tooling gated on that algorithm — heterogeneity summaries, residuals, funnel plots, z-curve conversion, predict, extract, pooled and adjusted effects. Version 4.0.0 in May 2026 collapses all of it into a unified brma class hierarchy.
qtl2convert vs robma: editorial side-by-side
qtl2convert
0.0ANALYTICS
A conversion utility in pure maintenance mode, tracking R-devel breakage release by release
◆ Current state
qtl2convert is the format-shim of the R/qtl2 ecosystem: it moves genotype probabilities and genetic maps between DOQTL, R/qtl and R/qtl2 representations. The last three releases contain no new conversion functions at all — 0.32 fixed a C string comparison flagged by CRAN, 0.34 restored attribute-clearing that R-devel 4.7 changed underneath the package, and 0.36 adjusted parallel core defaults plus a test tweak. The functional surface has been stable since 0.26 added cross2_ril_to_genril().
◆ Where it's heading
This is a package whose release cadence is driven by its dependencies, not its roadmap. Two of the last three releases exist purely because upstream R or CRAN's check suite moved; the maintainer responds within weeks and ships. The cores=0 change in 0.36 is the only user-visible behavior shift in over a year, and it landed simultaneously in sibling package qtl2fst — this is a maintainer-wide convention change, not a qtl2convert decision.
◆ Prediction
Expect the next release to be triggered by another R-devel or CRAN check change rather than a feature request, following the same pattern as 0.32 and 0.34.
robma
0.0ANALYTICS
RoBMA 4.0 tears out its own constructor surface and rebuilds on one class hierarchy
◆ Current state
RoBMA fits robust Bayesian model-averaged meta-analyses that adjust for publication bias. The 3.x line grew by accretion: separate constructors for each model family (RoBMA.reg, NoBMA, BiBMA and their .reg variants), a spike-and-slab algorithm in 3.3.0 that made estimation fast enough to matter, then a steady stream of post-estimation tooling gated on that algorithm — heterogeneity summaries, residuals, funnel plots, z-curve conversion, predict, extract, pooled and adjusted effects. Version 4.0.0 in May 2026 collapses all of it into a unified brma class hierarchy.
◆ Where it's heading
The 3.x series solved the modeling problem and left an interface problem behind: a caller had to know which of six constructors matched their data type, and argument names differed across them. 4.0.0 resolves that by making the model family a set of arguments rather than a function name, and by standardizing input naming on metafor-style conventions. It shipped one day after BayesTools 0.3.0, the author's own upstream infrastructure package, whose new standardization and prior-transformation machinery this rewrite depends on.
◆ Prediction
A rewrite this wide usually needs a follow-up, so expect 4.0.x patches addressing migration gaps as users hit the removed constructors and renamed arguments.
Alternatives to qtl2convert and robma
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either qtl2convert or robma.
gcube
gcube's recent releases are all packaging metadata, not simulation code
cubist
The R port of Quinlan's Cubist gets reproducibility fixes, not new modelling
ggstats
ggstats keeps widening what a coefficient or Likert plot can be
ecodive
ecodive rebuilt itself into a broad diversity-metric library, breaking as it went
simStateSpace
State-space data simulation for R, filled in one function at a time
See all qtl2convert alternatives → · See all robma alternatives →
Recent activity from qtl2convert and robma
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 1mo agoqtl2convertcores=0 now leaves one core free instead of taking all
- 2mo agoqtl2convertAttribute-clearing fix for R-devel 4.7
- 3mo agorobmaUnifies six model constructors into one brma class hierarchy ⚡
- 3mo agoqtl2convertC string comparison fix in encode_geno()
- 8mo agorobmaRoBMA 3.6.1
- 11mo agorobmaRoBMA 3.6.0
- 1y agorobmaRoBMA 3.5.1
- 1y agorobmaRoBMA 3.5.0
- 1y agorobmaRoBMA 3.4.0
- 2y agoqtl2convertBug fix in probs_doqtl_to_qtl2()
- 4y agoqtl2convertMaintenance release for a NEWS.md typo
- 4y agoqtl2convertAdds cross2_ril_to_genril() for RIL cross conversion
Frequently asked questions
What is the difference between qtl2convert and robma?
Both compete on the same themes — r-package — within Analytics. qtl2convert and robma are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is qtl2convert better than robma?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. qtl2convert and robma are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to qtl2convert?
Top qtl2convert alternatives in Analytics are ranked by recent ship velocity. Browse the "qtl2convert alternatives" section above for the current picks, or visit /alternatives/qtl2convert for the full list with editorial commentary on each.
What are the best alternatives to robma?
Top robma alternatives in Analytics are ranked by recent ship velocity. Browse the "robma alternatives" section above for the current picks, or visit /alternatives/robma for the full list with editorial commentary on each.