fillpattern
Pattern fills for ggplot2, hardened against the ways users write sizes
Comparison · Analytics
cubist vs qtl2convert
A side-by-side editorial comparison of cubist and qtl2convert — release velocity, themes, recent moves, and the top alternatives to consider.
Shared themes:r-package
cubist vs qtl2convert: at a glance
What is cubist?
The R port of Quinlan's Cubist gets reproducibility fixes, not new modelling
Cubist is the R interface to Quinlan's rule-based regression model, wrapping the original C sources behind an R API and feeding the tidymodels rules package. The 0.6.0 release adds a strip_time_stamps control that removes date, time and duration information from model output, and now errors rather than silently misbehaving when a date or date-time column is passed. Error reporting moves from base stop() and warning() to cli.
What is qtl2convert?
A conversion utility in pure maintenance mode, tracking R-devel breakage release by release
qtl2convert is the format-shim of the R/qtl2 ecosystem: it moves genotype probabilities and genetic maps between DOQTL, R/qtl and R/qtl2 representations. The last three releases contain no new conversion functions at all — 0.32 fixed a C string comparison flagged by CRAN, 0.34 restored attribute-clearing that R-devel 4.7 changed underneath the package, and 0.36 adjusted parallel core defaults plus a test tweak. The functional surface has been stable since 0.26 added cross2_ril_to_genril().
cubist vs qtl2convert: editorial side-by-side
cubist
0.0ANALYTICS
The R port of Quinlan's Cubist gets reproducibility fixes, not new modelling
◆ Current state
Cubist is the R interface to Quinlan's rule-based regression model, wrapping the original C sources behind an R API and feeding the tidymodels rules package. The 0.6.0 release adds a strip_time_stamps control that removes date, time and duration information from model output, and now errors rather than silently misbehaving when a date or date-time column is passed. Error reporting moves from base stop() and warning() to cli.
◆ Where it's heading
The direction is custodial: this is a mature algorithm with a stable definition, so the work is making a decades-old C codebase behave predictably inside a modern R workflow. The reproducibility thread is the clearest one — embedded timestamps mean two identical models compare as different objects, which breaks caching, testing and any workflow that hashes results. Alongside it runs slow C hygiene, from keyword symbol overwrites in 0.5.0 to unused-variable warnings in 0.6.0.
◆ Prediction
Expect continued small maintenance releases tracking CRAN compiler requirements and the needs of the rules package, with no change to the modelling algorithm itself.
qtl2convert
0.0ANALYTICS
A conversion utility in pure maintenance mode, tracking R-devel breakage release by release
◆ Current state
qtl2convert is the format-shim of the R/qtl2 ecosystem: it moves genotype probabilities and genetic maps between DOQTL, R/qtl and R/qtl2 representations. The last three releases contain no new conversion functions at all — 0.32 fixed a C string comparison flagged by CRAN, 0.34 restored attribute-clearing that R-devel 4.7 changed underneath the package, and 0.36 adjusted parallel core defaults plus a test tweak. The functional surface has been stable since 0.26 added cross2_ril_to_genril().
◆ Where it's heading
This is a package whose release cadence is driven by its dependencies, not its roadmap. Two of the last three releases exist purely because upstream R or CRAN's check suite moved; the maintainer responds within weeks and ships. The cores=0 change in 0.36 is the only user-visible behavior shift in over a year, and it landed simultaneously in sibling package qtl2fst — this is a maintainer-wide convention change, not a qtl2convert decision.
◆ Prediction
Expect the next release to be triggered by another R-devel or CRAN check change rather than a feature request, following the same pattern as 0.32 and 0.34.
Alternatives to cubist and qtl2convert
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either cubist or qtl2convert.
gcube
gcube's recent releases are all packaging metadata, not simulation code
ggstats
ggstats keeps widening what a coefficient or Likert plot can be
ecodive
ecodive rebuilt itself into a broad diversity-metric library, breaking as it went
simStateSpace
State-space data simulation for R, filled in one function at a time
rollama
rollama turns a local-LLM wrapper into an instrument for reproducible annotation
See all cubist alternatives → · See all qtl2convert alternatives →
Recent activity from cubist and qtl2convert
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 1mo agoqtl2convertcores=0 now leaves one core free instead of taking all
- 2mo agoqtl2convertAttribute-clearing fix for R-devel 4.7
- 3mo agoqtl2convertC string comparison fix in encode_geno()
- 5mo agocubiststrip_time_stamps makes fitted models reproducible
- 9mo agocubistCubist 0.5.1
- 1y agocubistCubist 0.5.0
- 2y agocubistCubist 0.4.4
- 2y agoqtl2convertBug fix in probs_doqtl_to_qtl2()
- 4y agoqtl2convertMaintenance release for a NEWS.md typo
- 4y agocubistCubist 0.4.0
- 4y agoqtl2convertAdds cross2_ril_to_genril() for RIL cross conversion
Frequently asked questions
What is the difference between cubist and qtl2convert?
Both compete on the same themes — r-package — within Analytics. cubist and qtl2convert are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is cubist better than qtl2convert?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. cubist and qtl2convert are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to cubist?
Top cubist alternatives in Analytics are ranked by recent ship velocity. Browse the "cubist alternatives" section above for the current picks, or visit /alternatives/cubist for the full list with editorial commentary on each.
What are the best alternatives to qtl2convert?
Top qtl2convert alternatives in Analytics are ranked by recent ship velocity. Browse the "qtl2convert alternatives" section above for the current picks, or visit /alternatives/qtl2convert for the full list with editorial commentary on each.