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Comparison · Analytics
qtl vs watina
A side-by-side editorial comparison of qtl and watina — release velocity, themes, recent moves, and the top alternatives to consider.
Shared themes:r-package
qtl vs watina: at a glance
What is qtl?
R/qtl is in pure custodial mode: every recent release answers a compiler, not a user
R/qtl is the long-established R package for QTL mapping in experimental crosses, covering interval mapping, composite interval mapping, multiple-QTL model fitting and the associated cross data formats. Nothing in the recent release history adds capability. Version 1.74 removes an include that started warning on CRAN, 1.72 improves an error message in cim(), and 1.70 migrates the C code from Calloc/Realloc/Free to their R_-prefixed equivalents for R-devel.
What is watina?
A groundwater database client that has started doing the domain analysis too
watina is the R interface to the Watina groundwater monitoring database, and its history is mostly about making data retrieval correct: filter depths guessed conservatively when missing, spatial masking, aggregation methods per observation well, and a long series of fixes to keep the lazy database queries working across dbplyr versions. The most recent release moves past retrieval into interpretation, adding ionic ratio calculation and a Van Wirdum diagram to plot chemistry data.
qtl vs watina: editorial side-by-side
qtl
0.0ANALYTICS
R/qtl is in pure custodial mode: every recent release answers a compiler, not a user
◆ Current state
R/qtl is the long-established R package for QTL mapping in experimental crosses, covering interval mapping, composite interval mapping, multiple-QTL model fitting and the associated cross data formats. Nothing in the recent release history adds capability. Version 1.74 removes an include that started warning on CRAN, 1.72 improves an error message in cim(), and 1.70 migrates the C code from Calloc/Realloc/Free to their R_-prefixed equivalents for R-devel.
◆ Where it's heading
The package is being maintained, not developed. The work divides cleanly into keeping the compiled code building against successive R and toolchain versions, and fixing narrow bugs reported through the issue tracker. The C-level migrations in particular are compliance with R's tightening of its C interface rather than anything chosen. Users should read the stability as maturity: the analysis surface has been fixed for years and the maintainer is keeping it installable.
◆ Prediction
R has continued to restrict its non-API C entry points, and this package has already made two such migrations, so further compile-time compliance work is the most likely content of the next release.
watina
0.0ANALYTICS
A groundwater database client that has started doing the domain analysis too
◆ Current state
watina is the R interface to the Watina groundwater monitoring database, and its history is mostly about making data retrieval correct: filter depths guessed conservatively when missing, spatial masking, aggregation methods per observation well, and a long series of fixes to keep the lazy database queries working across dbplyr versions. The most recent release moves past retrieval into interpretation, adding ionic ratio calculation and a Van Wirdum diagram to plot chemistry data.
◆ Where it's heading
The package is drifting from a database client toward a domain toolkit. Early releases fought the data layer — connection handling moved to inbodb, sorting semantics changed, defunct dbplyr calls worked around. Recent work assumes retrieval is solved and adds hydrochemical analysis on top, along with defensive handling for the physically impossible inputs that analysis exposes, such as zero conductivity in the warehouse.
◆ Prediction
Expect further chemistry analysis and plotting helpers rather than new retrieval functions, since that is where the newest release invested and where the accompanying vignette points.
Alternatives to qtl and watina
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either qtl or watina.
EvoPhylo
EvoPhylo added BEAST2 alongside MrBayes, then went quiet for two years.
treespace
treespace ships once every year or two, and only when CRAN or a user forces it.
Rpath
Rpath 1.1.0 learns to read Ecopath's own files, easing migration off the desktop tool.
TAF
TAF keeps turning ICES stock assessments into reproducible, dependency-pinned projects.
parallelDist
parallelDist is in pure preservation mode — one build fix every few years.
Recent activity from qtl and watina
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 4mo agowatinaIonic ratios and Van Wirdum diagrams for chemistry data
- 8mo agoqtlRemove R_ext/PrtUtil.h include flagged by CRAN
- 8mo agoqtlClearer cim() error when multiple phenotypes are passed
- 1y agoqtlC memory calls migrated to R_Calloc/R_Realloc/R_Free
- 2y agoqtlFix Rprintf call and remaining compiler warnings
- 2y agoqtlFix summary.scanone() thresholds and csvs phenotype reading
- 2y agowatinaKSgeneral moved to Suggests to survive CRAN removal
- 3y agoqtlFix addint()/addcovarint() with X chromosome QTL and missing phenotypes
- 5y agowatinaDataframe input restored after a defunct dbplyr call
- 5y agowatinadbplyr 2.0 compatibility drops the need for a forked dependency
- 5y agowatinaSpatial clustering of wells and richer location attributes
- 6y agowatinaSoil surface calculation fixed after a select() dropped the variable
Frequently asked questions
What is the difference between qtl and watina?
Both compete on the same themes — r-package — within Analytics. qtl and watina are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is qtl better than watina?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. qtl and watina are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to qtl?
Top qtl alternatives in Analytics are ranked by recent ship velocity. Browse the "qtl alternatives" section above for the current picks, or visit /alternatives/qtl-r for the full list with editorial commentary on each.
What are the best alternatives to watina?
Top watina alternatives in Analytics are ranked by recent ship velocity. Browse the "watina alternatives" section above for the current picks, or visit /alternatives/watina-r for the full list with editorial commentary on each.