arulesViz
arulesViz finished its move to ggplot2 and has been coasting on maintenance since.
Comparison · Analytics
qtl vs vellum
A side-by-side editorial comparison of qtl and vellum — release velocity, themes, recent moves, and the top alternatives to consider.
qtl vs vellum: at a glance
What is qtl?
R/qtl is in pure custodial mode: every recent release answers a compiler, not a user
R/qtl is the long-established R package for QTL mapping in experimental crosses, covering interval mapping, composite interval mapping, multiple-QTL model fitting and the associated cross data formats. Nothing in the recent release history adds capability. Version 1.74 removes an include that started warning on CRAN, 1.72 improves an error message in cim(), and 1.70 migrates the C code from Calloc/Realloc/Free to their R_-prefixed equivalents for R-devel.
What is vellum?
vellum's bugs are now found by using it, not testing it — the downstream grammar is doing the QA.
The rendering engine shipped nine releases in the two weeks around the end of July, six of them on a single day. Almost every entry is a correctness fix in a capability that worked when drawn and failed when measured, or worked in isolation and failed in composition. The release notes are unusually forensic: each one states the mechanism, the observable symptom, and why the fix mirrors the draw path rather than reimplementing it.
qtl vs vellum: editorial side-by-side
qtl
0.0ANALYTICS
R/qtl is in pure custodial mode: every recent release answers a compiler, not a user
◆ Current state
R/qtl is the long-established R package for QTL mapping in experimental crosses, covering interval mapping, composite interval mapping, multiple-QTL model fitting and the associated cross data formats. Nothing in the recent release history adds capability. Version 1.74 removes an include that started warning on CRAN, 1.72 improves an error message in cim(), and 1.70 migrates the C code from Calloc/Realloc/Free to their R_-prefixed equivalents for R-devel.
◆ Where it's heading
The package is being maintained, not developed. The work divides cleanly into keeping the compiled code building against successive R and toolchain versions, and fixing narrow bugs reported through the issue tracker. The C-level migrations in particular are compliance with R's tightening of its C interface rather than anything chosen. Users should read the stability as maturity: the analysis surface has been fixed for years and the maintainer is keeping it installable.
◆ Prediction
R has continued to restrict its non-API C entry points, and this package has already made two such migrations, so further compile-time compliance work is the most likely content of the next release.
vellum
5.0ANALYTICS
vellum's bugs are now found by using it, not testing it — the downstream grammar is doing the QA.
◆ Current state
The rendering engine shipped nine releases in the two weeks around the end of July, six of them on a single day. Almost every entry is a correctness fix in a capability that worked when drawn and failed when measured, or worked in isolation and failed in composition. The release notes are unusually forensic: each one states the mechanism, the observable symptom, and why the fix mirrors the draw path rather than reimplementing it.
◆ Where it's heading
The pivotal detail is stated outright in 0.6.3 — the first bug in the series found by using the engine from vellumplot rather than testing it in isolation. Every release since names the downstream as the source: the contrast rule's false positives, the lint rules that fired on all five sample plots, the keyed roundrect batch. A rendering engine with a real grammar built on top of it is now getting the integration coverage that unit tests structurally cannot provide, and the fixes are converging on one theme: the measurement path and the draw path must not drift.
◆ Prediction
Expect the release rate to fall as the vellumplot integration surface is exhausted, with remaining work concentrated in the lint rule set now that it is meant to gate builds rather than just inform.
Alternatives to qtl and vellum
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either qtl or vellum.
EvoPhylo
EvoPhylo added BEAST2 alongside MrBayes, then went quiet for two years.
treespace
treespace ships once every year or two, and only when CRAN or a user forces it.
Rpath
Rpath 1.1.0 learns to read Ecopath's own files, easing migration off the desktop tool.
TAF
TAF keeps turning ICES stock assessments into reproducible, dependency-pinned projects.
parallelDist
parallelDist is in pure preservation mode — one build fix every few years.
Recent activity from qtl and vellum
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 11d agovellumLinter grows to 20 rules and stops firing on every plot
- 13d agovellumAnimated SVGs no longer blink once and vanish or play in reverse
- 14d agovellumPick table now reports device pixels instead of two coordinate systems
- 15d agovellumContrast rule stops flagging every plot; gridlines become PDF artifacts
- 15d agovellumgrobwidth and grobheight now measure wrapped text, not the unwrapped line
- 15d agovellumKeyed roundrect becomes a real batch after downstream integration exposes it
- 8mo agoqtlRemove R_ext/PrtUtil.h include flagged by CRAN
- 8mo agoqtlClearer cim() error when multiple phenotypes are passed
- 1y agoqtlC memory calls migrated to R_Calloc/R_Realloc/R_Free
- 2y agoqtlFix Rprintf call and remaining compiler warnings
- 2y agoqtlFix summary.scanone() thresholds and csvs phenotype reading
- 3y agoqtlFix addint()/addcovarint() with X chromosome QTL and missing phenotypes
Frequently asked questions
What is the difference between qtl and vellum?
They serve adjacent needs but don't currently overlap on shipped themes. vellum is currently shipping more aggressively (velocity 5.0 vs 0.0), with 0 editorial sparks in the last 30 days against 0. See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is qtl better than vellum?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. vellum is currently shipping more aggressively (velocity 5.0 vs 0.0), with 0 editorial sparks in the last 30 days against 0. For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to qtl?
Top qtl alternatives in Analytics are ranked by recent ship velocity. Browse the "qtl alternatives" section above for the current picks, or visit /alternatives/qtl-r for the full list with editorial commentary on each.
What are the best alternatives to vellum?
Top vellum alternatives in Analytics are ranked by recent ship velocity. Browse the "vellum alternatives" section above for the current picks, or visit /alternatives/vellum-r for the full list with editorial commentary on each.