EvoPhylo
EvoPhylo added BEAST2 alongside MrBayes, then went quiet for two years.
Comparison · Analytics
qtl vs tidyterra
A side-by-side editorial comparison of qtl and tidyterra — release velocity, themes, recent moves, and the top alternatives to consider.
Shared themes:r-package
qtl vs tidyterra: at a glance
What is qtl?
R/qtl is in pure custodial mode: every recent release answers a compiler, not a user
R/qtl is the long-established R package for QTL mapping in experimental crosses, covering interval mapping, composite interval mapping, multiple-QTL model fitting and the associated cross data formats. Nothing in the recent release history adds capability. Version 1.74 removes an include that started warning on CRAN, 1.72 improves an error message in cim(), and 1.70 migrates the C code from Calloc/Realloc/Free to their R_-prefixed equivalents for R-devel.
What is tidyterra?
tidyterra finished wiring terra objects into the tidyverse, one verb family at a time.
tidyterra supplies tidyverse methods and ggplot2 geoms for terra's SpatRaster and SpatVector classes, so spatial objects can be manipulated with dplyr verbs and plotted without conversion. The 1.0.0 release in January 2026 set a hard ggplot2 4.0.0 floor and added broom-style generics — tidy(), glance() and required_pkgs() across SpatRaster, SpatVector, SpatGraticule and SpatExtent. The 1.1.0 and 1.2.0 releases since have filled in the remaining dplyr and tidyr verb surface for SpatVector.
qtl vs tidyterra: editorial side-by-side
qtl
0.0ANALYTICS
R/qtl is in pure custodial mode: every recent release answers a compiler, not a user
◆ Current state
R/qtl is the long-established R package for QTL mapping in experimental crosses, covering interval mapping, composite interval mapping, multiple-QTL model fitting and the associated cross data formats. Nothing in the recent release history adds capability. Version 1.74 removes an include that started warning on CRAN, 1.72 improves an error message in cim(), and 1.70 migrates the C code from Calloc/Realloc/Free to their R_-prefixed equivalents for R-devel.
◆ Where it's heading
The package is being maintained, not developed. The work divides cleanly into keeping the compiled code building against successive R and toolchain versions, and fixing narrow bugs reported through the issue tracker. The C-level migrations in particular are compliance with R's tightening of its C interface rather than anything chosen. Users should read the stability as maturity: the analysis surface has been fixed for years and the maintainer is keeping it installable.
◆ Prediction
R has continued to restrict its non-API C entry points, and this package has already made two such migrations, so further compile-time compliance work is the most likely content of the next release.
tidyterra
0.0ANALYTICS
tidyterra finished wiring terra objects into the tidyverse, one verb family at a time.
◆ Current state
tidyterra supplies tidyverse methods and ggplot2 geoms for terra's SpatRaster and SpatVector classes, so spatial objects can be manipulated with dplyr verbs and plotted without conversion. The 1.0.0 release in January 2026 set a hard ggplot2 4.0.0 floor and added broom-style generics — tidy(), glance() and required_pkgs() across SpatRaster, SpatVector, SpatGraticule and SpatExtent. The 1.1.0 and 1.2.0 releases since have filled in the remaining dplyr and tidyr verb surface for SpatVector.
◆ Where it's heading
The package is converging on complete verb coverage rather than branching into new capability. 1.2.0 landed the grouping and nesting family — group_split, group_nest, nest_by, nest, nest_join, group_map, group_modify, reframe, cross_join, complete, expand — which is the last large gap between SpatVector and an ordinary data frame. Its cadence is set externally: releases track ggplot2 and dplyr version transitions, adopting arguments like .by as they stabilize upstream. The maintainer now states AI assistance explicitly for both documentation and generated methods.
◆ Prediction
With the verb surface close to complete, expect the next releases to track upstream ggplot2 and dplyr changes and to extend coverage to SpatRaster where methods currently exist only for SpatVector.
Alternatives to qtl and tidyterra
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either qtl or tidyterra.
treespace
treespace ships once every year or two, and only when CRAN or a user forces it.
Rpath
Rpath 1.1.0 learns to read Ecopath's own files, easing migration off the desktop tool.
TAF
TAF keeps turning ICES stock assessments into reproducible, dependency-pinned projects.
parallelDist
parallelDist is in pure preservation mode — one build fix every few years.
cairo
Cairo finally catches R's graphics engine, all the way to GE API 16.
See all qtl alternatives → · See all tidyterra alternatives →
Recent activity from qtl and tidyterra
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 1mo agotidyterraGrouping and nesting verbs arrive for SpatVector
- 5mo agotidyterra.by stabilizes across mutate, filter, slice and fill
- 6mo agotidyterra1.0.0 requires ggplot2 4.0 and adds broom-style generics ⚡
- 8mo agoqtlRemove R_ext/PrtUtil.h include flagged by CRAN
- 8mo agoqtlClearer cim() error when multiple phenotypes are passed
- 1y agotidyterraTest hotfix for CRAN
- 1y agotidyterramask_projection stops rasters wrapping around the globe
- 1y agotidyterraFactor levels combined across layers; scale limits truncate legends
- 1y agoqtlC memory calls migrated to R_Calloc/R_Realloc/R_Free
- 2y agoqtlFix Rprintf call and remaining compiler warnings
- 2y agoqtlFix summary.scanone() thresholds and csvs phenotype reading
- 3y agoqtlFix addint()/addcovarint() with X chromosome QTL and missing phenotypes
Frequently asked questions
What is the difference between qtl and tidyterra?
Both compete on the same themes — r-package — within Analytics. qtl and tidyterra are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is qtl better than tidyterra?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. qtl and tidyterra are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to qtl?
Top qtl alternatives in Analytics are ranked by recent ship velocity. Browse the "qtl alternatives" section above for the current picks, or visit /alternatives/qtl-r for the full list with editorial commentary on each.
What are the best alternatives to tidyterra?
Top tidyterra alternatives in Analytics are ranked by recent ship velocity. Browse the "tidyterra alternatives" section above for the current picks, or visit /alternatives/tidyterra for the full list with editorial commentary on each.