EvoPhylo
EvoPhylo added BEAST2 alongside MrBayes, then went quiet for two years.
A side-by-side editorial comparison of qtl and spanishoddata — release velocity, themes, recent moves, and the top alternatives to consider.
R/qtl is in pure custodial mode: every recent release answers a compiler, not a user
R/qtl is the long-established R package for QTL mapping in experimental crosses, covering interval mapping, composite interval mapping, multiple-QTL model fitting and the associated cross data formats. Nothing in the recent release history adds capability. Version 1.74 removes an include that started warning on CRAN, 1.72 improves an error message in cim(), and 1.70 migrates the C code from Calloc/Realloc/Free to their R_-prefixed equivalents for R-devel.
spanishoddata spent a year finding out its 2020-2021 data was quietly incomplete.
spanishoddata provides access to Spain's open mobility origin-destination datasets from the Ministry of Transport, converting them into DuckDB and parquet for analysis at scale. Nearly every release in this window is a data-fidelity fix rather than a feature: district-to-municipal reaggregation was wrong for the 2020-2021 vintage, literal 'NA' strings in the source CSVs broke DuckDB enum casting, and the Amazon S3 metadata bucket turned out to be truncated at March 2021, silently hiding data.
R/qtl is the long-established R package for QTL mapping in experimental crosses, covering interval mapping, composite interval mapping, multiple-QTL model fitting and the associated cross data formats. Nothing in the recent release history adds capability. Version 1.74 removes an include that started warning on CRAN, 1.72 improves an error message in cim(), and 1.70 migrates the C code from Calloc/Realloc/Free to their R_-prefixed equivalents for R-devel.
The package is being maintained, not developed. The work divides cleanly into keeping the compiled code building against successive R and toolchain versions, and fixing narrow bugs reported through the issue tracker. The C-level migrations in particular are compliance with R's tightening of its C interface rather than anything chosen. Users should read the stability as maturity: the analysis surface has been fixed for years and the maintainer is keeping it installable.
R has continued to restrict its non-API C entry points, and this package has already made two such migrations, so further compile-time compliance work is the most likely content of the next release.
spanishoddata provides access to Spain's open mobility origin-destination datasets from the Ministry of Transport, converting them into DuckDB and parquet for analysis at scale. Nearly every release in this window is a data-fidelity fix rather than a feature: district-to-municipal reaggregation was wrong for the 2020-2021 vintage, literal 'NA' strings in the source CSVs broke DuckDB enum casting, and the Amazon S3 metadata bucket turned out to be truncated at March 2021, silently hiding data.
The package is in a trust-building phase. The pattern across 0.2.1 through 0.2.6 is the maintainers repeatedly discovering that upstream metadata and the package's own aggregation were misrepresenting what data existed, then fixing it and adding a check so it surfaces next time. That is now backed by infrastructure: comprehensive unit tests plus weekly live-data runs on GitHub workers that alert maintainers when the upstream ministry changes something. The last feature release sits outside the six-entry window, which is itself the story.
Expect continued upstream-tracking fixes as the ministry's API and S3 layout shift, with the experimental quick-access and checksum functions the most likely candidates for promotion to stable.
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either qtl or spanishoddata.
EvoPhylo added BEAST2 alongside MrBayes, then went quiet for two years.
treespace ships once every year or two, and only when CRAN or a user forces it.
Rpath 1.1.0 learns to read Ecopath's own files, easing migration off the desktop tool.
TAF keeps turning ICES stock assessments into reproducible, dependency-pinned projects.
parallelDist is in pure preservation mode — one build fix every few years.
Cairo finally catches R's graphics engine, all the way to GE API 16.
See all qtl alternatives → · See all spanishoddata alternatives →
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
Both compete on the same themes — r-package — within Analytics. qtl and spanishoddata are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. qtl and spanishoddata are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
Top qtl alternatives in Analytics are ranked by recent ship velocity. Browse the "qtl alternatives" section above for the current picks, or visit /alternatives/qtl-r for the full list with editorial commentary on each.
Top spanishoddata alternatives in Analytics are ranked by recent ship velocity. Browse the "spanishoddata alternatives" section above for the current picks, or visit /alternatives/spanishoddata for the full list with editorial commentary on each.