constants
The R package for CODATA constants rebuilt its symbol table on NIST's naming so future updates stop being hand work.
Comparison · Analytics
qqman vs TAF
A side-by-side editorial comparison of qqman and TAF — release velocity, themes, recent moves, and the top alternatives to consider.
qqman vs TAF: at a glance
What is qqman?
The Manhattan-plot package for GWAS results, finished and dormant since 2017.
qqman does two things: manhattan() and qq() plots for genome-wide association study results. Its six visible releases run from 2014 to a single 2017 packaging fix, and the last release with any user-facing change shipped in 2015. The archive is non-monotonic — a 0.0.0 tag published after 0.1.1 archives the pre-package standalone script — so version order and publication order disagree.
What is TAF?
TAF keeps turning ICES stock assessments into reproducible, dependency-pinned projects.
TAF is the R tooling behind the ICES Transparent Assessment Framework, which standardizes how fish stock assessments are laid out, sourced and rerun. The 4.3.0 release is the largest in years, adding roughly ten functions covering dependency installation and analysis, software version checks, directory inspection and README drafting. The package has carried zero non-base dependencies since 4.0.0, and the new work is careful not to break that.
qqman vs TAF: editorial side-by-side
qqman
0.0ANALYTICS
The Manhattan-plot package for GWAS results, finished and dormant since 2017.
◆ Current state
qqman does two things: manhattan() and qq() plots for genome-wide association study results. Its six visible releases run from 2014 to a single 2017 packaging fix, and the last release with any user-facing change shipped in 2015. The archive is non-monotonic — a 0.0.0 tag published after 0.1.1 archives the pre-package standalone script — so version order and publication order disagree.
◆ Where it's heading
The real development window was 2014 to 2015. The 0.1.2 release did the substantive work, replacing the assumption that SNPs are evenly distributed across chromosomes and handing users control of axis limits, labels and log transformation; 0.1.3 then added annotation by p-value threshold and top-SNP-per-chromosome. After that the package stops. Notably, the archival 0.0.0 entry records that the original script had confidence intervals on QQ plots and richer highlighting than the released package ever regained.
◆ Prediction
With one packaging fix in the last decade, these entries support no prediction of further releases. The package reads as complete for its narrow purpose rather than abandoned mid-arc.
TAF
0.0ANALYTICS
TAF keeps turning ICES stock assessments into reproducible, dependency-pinned projects.
◆ Current state
TAF is the R tooling behind the ICES Transparent Assessment Framework, which standardizes how fish stock assessments are laid out, sourced and rerun. The 4.3.0 release is the largest in years, adding roughly ten functions covering dependency installation and analysis, software version checks, directory inspection and README drafting. The package has carried zero non-base dependencies since 4.0.0, and the new work is careful not to break that.
◆ Where it's heading
The arc runs from analysis runner to project toolkit. Early 3.x releases built out the bootstrap and metadata machinery; 4.0.0 renamed the package and stripped every external dependency; 4.2.0 cleaned up vocabulary that confused users. 4.3.0 turns outward to the people running assessments — install.deps(), pdeps() and check.software() address reproducing someone else's environment, while draft.readme(), taf.example() and dir.tree() address understanding an unfamiliar project.
◆ Prediction
Expect the follow-up work to harden the new dependency functions rather than add more surface, since 4.3.1 arrived immediately to fix wide2long() compatibility with older R and that batch of ten functions has had little field exposure.
Alternatives to qqman and TAF
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either qqman or TAF.
austraits
The R client for AusTraits spends its releases chasing the dataset it reads.
ggdemetra
A ggplot2 layer for seasonal adjustment output, filling in one plot type at a time.
fossilsim
A fossil-record simulator that quietly grew a trait-evolution engine.
tern.rbmi
Reference-based multiple imputation tables, shipping only what CRAN checks demand.
tern.mmrm
An MMRM tabulation package that has published nothing since its 2024 CRAN releases.
Recent activity from qqman and TAF
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 10mo agoTAFTAF 4.3.1 reworks wide2long() for older R
- 10mo agoTAFTAF 4.3.0 adds dependency and project-scaffolding tooling
- 3y agoTAFTAF 4.2.0 renames 'bootstrap' to 'boot', keeps back-compat
- 3y agoTAFTAF 4.1.0 adds taf2html() and dot.case function aliases
- 5y agoTAFTAF 4.0.0 refocuses on ICES and drops every external dependency ⚡
- 5y agoTAFTAF 3.6.0 adds metadata tooling and drops the bibtex dependency
- 9y agoqqmanREADME image path fix for pandoc
- 11y agoqqmanAnnotate SNPs by p-value threshold or per-chromosome top hit
- 11y agoqqmanChromosome ticks stop assuming even SNP spacing; axis control opens up
- 12y agoqqmanArchival tag for the pre-package standalone script
- 12y agoqqmanVignette touch-up
- 12y agoqqmanZenodo archival tag, no code change
Frequently asked questions
What is the difference between qqman and TAF?
They serve adjacent needs but don't currently overlap on shipped themes. qqman and TAF are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is qqman better than TAF?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. qqman and TAF are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to qqman?
Top qqman alternatives in Analytics are ranked by recent ship velocity. Browse the "qqman alternatives" section above for the current picks, or visit /alternatives/qqman-r for the full list with editorial commentary on each.
What are the best alternatives to TAF?
Top TAF alternatives in Analytics are ranked by recent ship velocity. Browse the "TAF alternatives" section above for the current picks, or visit /alternatives/taf-r for the full list with editorial commentary on each.