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Comparison · Analytics

qqman vs spatstat

A side-by-side editorial comparison of qqman and spatstat — release velocity, themes, recent moves, and the top alternatives to consider.

qqman vs spatstat: at a glance

Featureqqmanspatstat
SectorAnalyticsAnalytics
Velocity score0.00.0
Sparks · 30d00
Top themesgwas, genomics, manhattan-plot, visualizationspatial-statistics, r-package, metapackage, documentation
Last editorial update1h ago12h ago
WebsiteVisit →Visit →

What is qqman?

The Manhattan-plot package for GWAS results, finished and dormant since 2017.

qqman does two things: manhattan() and qq() plots for genome-wide association study results. Its six visible releases run from 2014 to a single 2017 packaging fix, and the last release with any user-facing change shipped in 2015. The archive is non-monotonic — a 0.0.0 tag published after 0.1.1 archives the pre-package standalone script — so version order and publication order disagree.

Read the full qqman trajectory →

What is spatstat?

The spatstat umbrella package, now mostly a pointer to the sub-packages doing the work

spatstat is the front package of a family that was split into specialised components — spatstat.geom, spatstat.random, spatstat.model, spatstat.explore, spatstat.univar and spatstat.sparse. Its own release notes reflect that: entries in this window are largely announcements of where the real changes landed, plus documentation and cross-reference maintenance. The codebase it fronts passed 200,000 lines as of 3.5-1.

Read the full spatstat trajectory →

qqman vs spatstat: editorial side-by-side

Q
qqman
ANALYTICS
0.0

The Manhattan-plot package for GWAS results, finished and dormant since 2017.

◆ Current state

qqman does two things: manhattan() and qq() plots for genome-wide association study results. Its six visible releases run from 2014 to a single 2017 packaging fix, and the last release with any user-facing change shipped in 2015. The archive is non-monotonic — a 0.0.0 tag published after 0.1.1 archives the pre-package standalone script — so version order and publication order disagree.

◆ Where it's heading

The real development window was 2014 to 2015. The 0.1.2 release did the substantive work, replacing the assumption that SNPs are evenly distributed across chromosomes and handing users control of axis limits, labels and log transformation; 0.1.3 then added annotation by p-value threshold and top-SNP-per-chromosome. After that the package stops. Notably, the archival 0.0.0 entry records that the original script had confidence intervals on QQ plots and richer highlighting than the released package ever regained.

◆ Prediction

With one packaging fix in the last decade, these entries support no prediction of further releases. The package reads as complete for its narrow purpose rather than abandoned mid-arc.

S
spatstat
ANALYTICS
0.0

The spatstat umbrella package, now mostly a pointer to the sub-packages doing the work

◆ Current state

spatstat is the front package of a family that was split into specialised components — spatstat.geom, spatstat.random, spatstat.model, spatstat.explore, spatstat.univar and spatstat.sparse. Its own release notes reflect that: entries in this window are largely announcements of where the real changes landed, plus documentation and cross-reference maintenance. The codebase it fronts passed 200,000 lines as of 3.5-1.

◆ Where it's heading

The split is effectively complete and the umbrella's role has settled into coordination — tracking version dependencies across sub-packages and pointing users to them. The family has kept subdividing over this period, with spatstat.univar joining in 3.1-0. The one substantive user-facing addition here is documentation infrastructure: 3.3-0 added the ability to list the history of changes to a specific function, which is a navigational answer to a codebase now spread across many packages.

◆ Prediction

Expect this package's notes to continue summarising sub-package activity rather than carrying features of its own, since every release in this window does exactly that. Read spatstat.geom, spatstat.random and spatstat.model for the substance.

Alternatives to qqman and spatstat

Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either qqman or spatstat.

See all qqman alternatives → · See all spatstat alternatives →

Recent activity from qqman and spatstat

Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.

  1. 2mo agospatstatSub-package updates across sparse, univar and random
  2. 6mo agospatstatspatstat passes 200,000 lines of code
  3. 10mo agospatstatNew vignette documenting NA spatial objects
  4. 1y agospatstatPer-function change history now listable
  5. 2y agospatstatspatstat.univar joins the package family
  6. 3y agospatstatSub-package cross-references and docs corrected
  7. 9y agoqqmanREADME image path fix for pandoc
  8. 11y agoqqmanAnnotate SNPs by p-value threshold or per-chromosome top hit
  9. 11y agoqqmanChromosome ticks stop assuming even SNP spacing; axis control opens up
  10. 12y agoqqmanArchival tag for the pre-package standalone script
  11. 12y agoqqmanVignette touch-up
  12. 12y agoqqmanZenodo archival tag, no code change

Frequently asked questions

What is the difference between qqman and spatstat?

They serve adjacent needs but don't currently overlap on shipped themes. qqman and spatstat are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.

Is qqman better than spatstat?

Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. qqman and spatstat are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.

What are the best alternatives to qqman?

Top qqman alternatives in Analytics are ranked by recent ship velocity. Browse the "qqman alternatives" section above for the current picks, or visit /alternatives/qqman-r for the full list with editorial commentary on each.

What are the best alternatives to spatstat?

Top spatstat alternatives in Analytics are ranked by recent ship velocity. Browse the "spatstat alternatives" section above for the current picks, or visit /alternatives/spatstat-r for the full list with editorial commentary on each.