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qqman vs spatstat.model

A side-by-side editorial comparison of qqman and spatstat.model — release velocity, themes, recent moves, and the top alternatives to consider.

qqman vs spatstat.model: at a glance

Featureqqmanspatstat.model
SectorAnalyticsAnalytics
Velocity score0.02.5
Sparks · 30d00
Top themesgwas, genomics, manhattan-plot, visualizationspatial-statistics, point-processes, model-fitting, r-package
Last editorial update1h ago12h ago
WebsiteVisit →Visit →

What is qqman?

The Manhattan-plot package for GWAS results, finished and dormant since 2017.

qqman does two things: manhattan() and qq() plots for genome-wide association study results. Its six visible releases run from 2014 to a single 2017 packaging fix, and the last release with any user-facing change shipped in 2015. The archive is non-monotonic — a 0.0.0 tag published after 0.1.1 archives the pre-package standalone script — so version order and publication order disagree.

Read the full qqman trajectory →

What is spatstat.model?

spatstat's inference layer builds out determinantal and cluster process fitting

spatstat.model fits point process models and provides the diagnostics that go with them. The recent window is dominated by determinantal point process work — a variance-covariance matrix and more diagnostics in 3.7-2, additional `intensity` and `repul` methods in 3.7-1, and ROC curves for determinantal models in 3.5-0. Cluster and Cox process inference has advanced in parallel, with Waagepetersen's composite likelihood arriving in 3.6-1.

Read the full spatstat.model trajectory →

qqman vs spatstat.model: editorial side-by-side

Q
qqman
ANALYTICS
0.0

The Manhattan-plot package for GWAS results, finished and dormant since 2017.

◆ Current state

qqman does two things: manhattan() and qq() plots for genome-wide association study results. Its six visible releases run from 2014 to a single 2017 packaging fix, and the last release with any user-facing change shipped in 2015. The archive is non-monotonic — a 0.0.0 tag published after 0.1.1 archives the pre-package standalone script — so version order and publication order disagree.

◆ Where it's heading

The real development window was 2014 to 2015. The 0.1.2 release did the substantive work, replacing the assumption that SNPs are evenly distributed across chromosomes and handing users control of axis limits, labels and log transformation; 0.1.3 then added annotation by p-value threshold and top-SNP-per-chromosome. After that the package stops. Notably, the archival 0.0.0 entry records that the original script had confidence intervals on QQ plots and richer highlighting than the released package ever regained.

◆ Prediction

With one packaging fix in the last decade, these entries support no prediction of further releases. The package reads as complete for its narrow purpose rather than abandoned mid-arc.

S2.5

spatstat's inference layer builds out determinantal and cluster process fitting

◆ Current state

spatstat.model fits point process models and provides the diagnostics that go with them. The recent window is dominated by determinantal point process work — a variance-covariance matrix and more diagnostics in 3.7-2, additional `intensity` and `repul` methods in 3.7-1, and ROC curves for determinantal models in 3.5-0. Cluster and Cox process inference has advanced in parallel, with Waagepetersen's composite likelihood arriving in 3.6-1.

◆ Where it's heading

The pattern is that model classes enter the package as fitting machinery first and only later gain the apparatus that makes them usable in practice — standard errors, diagnostics, residuals, model checking. Determinantal processes are visibly midway through that progression, reaching variance-covariance estimation only in the most recent release. Around this, the package has been broadening where models can be fitted at all: replicated point patterns on linear networks in 3.5-0, extended spatial logistic regression, and conversion of recursively partitioned models to tessellations.

◆ Prediction

Expect determinantal model support to keep filling out along the same path other model classes took, since variance estimation has only just arrived and partial residuals already exist for the cluster and Cox families. The entries do not signal a move into three dimensions here, unlike the geometry and simulation packages.

Alternatives to qqman and spatstat.model

Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either qqman or spatstat.model.

See all qqman alternatives → · See all spatstat.model alternatives →

Recent activity from qqman and spatstat.model

Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.

  1. 18d agospatstat.modelVariance-covariance and diagnostics for determinantal models
  2. 2mo agospatstat.modelMore intensity and repul methods; boundary-aware predictions
  3. 6mo agospatstat.modelComposite likelihood for cluster processes
  4. 8mo agospatstat.modelReplicated network models and partial residuals
  5. 10mo agospatstat.modelintensity.ppm improvements for Geyer models
  6. 1y agospatstat.modelROC curve support substantially extended
  7. 9y agoqqmanREADME image path fix for pandoc
  8. 11y agoqqmanAnnotate SNPs by p-value threshold or per-chromosome top hit
  9. 11y agoqqmanChromosome ticks stop assuming even SNP spacing; axis control opens up
  10. 12y agoqqmanArchival tag for the pre-package standalone script
  11. 12y agoqqmanVignette touch-up
  12. 12y agoqqmanZenodo archival tag, no code change

Frequently asked questions

What is the difference between qqman and spatstat.model?

They serve adjacent needs but don't currently overlap on shipped themes. spatstat.model is currently shipping more aggressively (velocity 2.5 vs 0.0), with 0 editorial sparks in the last 30 days against 0. See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.

Is qqman better than spatstat.model?

Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. spatstat.model is currently shipping more aggressively (velocity 2.5 vs 0.0), with 0 editorial sparks in the last 30 days against 0. For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.

What are the best alternatives to qqman?

Top qqman alternatives in Analytics are ranked by recent ship velocity. Browse the "qqman alternatives" section above for the current picks, or visit /alternatives/qqman-r for the full list with editorial commentary on each.

What are the best alternatives to spatstat.model?

Top spatstat.model alternatives in Analytics are ranked by recent ship velocity. Browse the "spatstat.model alternatives" section above for the current picks, or visit /alternatives/spatstat-model for the full list with editorial commentary on each.