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Comparison · Analytics

qqman vs socialmixr

A side-by-side editorial comparison of qqman and socialmixr — release velocity, themes, recent moves, and the top alternatives to consider.

qqman vs socialmixr: at a glance

Featureqqmansocialmixr
SectorAnalyticsAnalytics
Velocity score0.00.0
Sparks · 30d00
Top themesgwas, genomics, manhattan-plot, visualizationcontact matrices, epidemiology, pipeline api, breaking changes
Last editorial update1h ago11h ago
WebsiteVisit →Visit →

What is qqman?

The Manhattan-plot package for GWAS results, finished and dormant since 2017.

qqman does two things: manhattan() and qq() plots for genome-wide association study results. Its six visible releases run from 2014 to a single 2017 packaging fix, and the last release with any user-facing change shipped in 2015. The archive is non-monotonic — a 0.0.0 tag published after 0.1.1 archives the pre-package standalone script — so version order and publication order disagree.

Read the full qqman trajectory →

What is socialmixr?

socialmixr breaks its one-shot contact_matrix() call into a composable pipeline.

socialmixr builds age-structured social contact matrices from survey data for infectious-disease modelling. Version 0.6.0 replaces the monolithic contact_matrix() entry point with a chain of composable steps — filter, assign age groups, weigh, compute, then symmetrise, split or convert per capita — behind a new contact_matrix S3 class. Survey downloading is being handed off to a separate contactsurveys package.

Read the full socialmixr trajectory →

qqman vs socialmixr: editorial side-by-side

Q
qqman
ANALYTICS
0.0

The Manhattan-plot package for GWAS results, finished and dormant since 2017.

◆ Current state

qqman does two things: manhattan() and qq() plots for genome-wide association study results. Its six visible releases run from 2014 to a single 2017 packaging fix, and the last release with any user-facing change shipped in 2015. The archive is non-monotonic — a 0.0.0 tag published after 0.1.1 archives the pre-package standalone script — so version order and publication order disagree.

◆ Where it's heading

The real development window was 2014 to 2015. The 0.1.2 release did the substantive work, replacing the assumption that SNPs are evenly distributed across chromosomes and handing users control of axis limits, labels and log transformation; 0.1.3 then added annotation by p-value threshold and top-SNP-per-chromosome. After that the package stops. Notably, the archival 0.0.0 entry records that the original script had confidence intervals on QQ plots and richer highlighting than the released package ever regained.

◆ Prediction

With one packaging fix in the last decade, these entries support no prediction of further releases. The package reads as complete for its narrow purpose rather than abandoned mid-arc.

S
socialmixr
ANALYTICS
0.0

socialmixr breaks its one-shot contact_matrix() call into a composable pipeline.

◆ Current state

socialmixr builds age-structured social contact matrices from survey data for infectious-disease modelling. Version 0.6.0 replaces the monolithic contact_matrix() entry point with a chain of composable steps — filter, assign age groups, weigh, compute, then symmetrise, split or convert per capita — behind a new contact_matrix S3 class. Survey downloading is being handed off to a separate contactsurveys package.

◆ Where it's heading

The arc from 0.4.0 to 0.6.0 is decomposition: first extracting helpers like assign_age_groups(), then moving downloads out of the package, and now exposing every stage of matrix construction as its own verb. Breaking changes are accepted at each step — preserved empty age groups, arrays instead of xtabs, [N,Inf) labels — with the new class inheriting from list so existing $matrix access keeps working. The label change is explicitly aligned with the contactmatrix package.

◆ Prediction

Expect the deprecated dotted argument names and the remaining in-package download paths to be removed once the contactsurveys handoff completes, leaving contact_matrix() as a thin wrapper over the pipeline.

Alternatives to qqman and socialmixr

Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either qqman or socialmixr.

See all qqman alternatives → · See all socialmixr alternatives →

Recent activity from qqman and socialmixr

Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.

  1. 3mo agosocialmixrContact matrices become a composable pipeline
  2. 6mo agosocialmixrPatch: load_survey() handles files without cont_id
  3. 6mo agosocialmixrAge-group assignment and population lookup split out
  4. 1y agosocialmixrFaster survey loading and cached Zenodo lookups
  5. 2y agosocialmixrcontact_matrix() now takes survey objects only
  6. 2y agosocialmixrTest fixes for machine-precision failures
  7. 9y agoqqmanREADME image path fix for pandoc
  8. 11y agoqqmanAnnotate SNPs by p-value threshold or per-chromosome top hit
  9. 11y agoqqmanChromosome ticks stop assuming even SNP spacing; axis control opens up
  10. 12y agoqqmanArchival tag for the pre-package standalone script
  11. 12y agoqqmanVignette touch-up
  12. 12y agoqqmanZenodo archival tag, no code change

Frequently asked questions

What is the difference between qqman and socialmixr?

They serve adjacent needs but don't currently overlap on shipped themes. qqman and socialmixr are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.

Is qqman better than socialmixr?

Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. qqman and socialmixr are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.

What are the best alternatives to qqman?

Top qqman alternatives in Analytics are ranked by recent ship velocity. Browse the "qqman alternatives" section above for the current picks, or visit /alternatives/qqman-r for the full list with editorial commentary on each.

What are the best alternatives to socialmixr?

Top socialmixr alternatives in Analytics are ranked by recent ship velocity. Browse the "socialmixr alternatives" section above for the current picks, or visit /alternatives/socialmixr for the full list with editorial commentary on each.