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qqman vs Rpath

A side-by-side editorial comparison of qqman and Rpath — release velocity, themes, recent moves, and the top alternatives to consider.

qqman vs Rpath: at a glance

FeatureqqmanRpath
SectorAnalyticsAnalytics
Velocity score0.00.0
Sparks · 30d00
Top themesgwas, genomics, manhattan-plot, visualizationecosystem-modeling, fisheries, mass-balance, interoperability
Last editorial update1h ago3h ago
WebsiteVisit →Visit →

What is qqman?

The Manhattan-plot package for GWAS results, finished and dormant since 2017.

qqman does two things: manhattan() and qq() plots for genome-wide association study results. Its six visible releases run from 2014 to a single 2017 packaging fix, and the last release with any user-facing change shipped in 2015. The archive is non-monotonic — a 0.0.0 tag published after 0.1.1 archives the pre-package standalone script — so version order and publication order disagree.

Read the full qqman trajectory →

What is Rpath?

Rpath 1.1.0 learns to read Ecopath's own files, easing migration off the desktop tool.

Rpath is NOAA's R implementation of the Ecopath with Ecosim mass-balance equations for marine food web models. The feed is an archive backfill and arrives out of version order, with several entries carrying only a journal abstract instead of release notes. The substantive recent work is 1.0.0, which paired real ecosim bug fixes with the documentation and packaging expected of a 1.0, and 1.1.0, which adds .eiixml import and new balance estimation.

Read the full Rpath trajectory →

qqman vs Rpath: editorial side-by-side

Q
qqman
ANALYTICS
0.0

The Manhattan-plot package for GWAS results, finished and dormant since 2017.

◆ Current state

qqman does two things: manhattan() and qq() plots for genome-wide association study results. Its six visible releases run from 2014 to a single 2017 packaging fix, and the last release with any user-facing change shipped in 2015. The archive is non-monotonic — a 0.0.0 tag published after 0.1.1 archives the pre-package standalone script — so version order and publication order disagree.

◆ Where it's heading

The real development window was 2014 to 2015. The 0.1.2 release did the substantive work, replacing the assumption that SNPs are evenly distributed across chromosomes and handing users control of axis limits, labels and log transformation; 0.1.3 then added annotation by p-value threshold and top-SNP-per-chromosome. After that the package stops. Notably, the archival 0.0.0 entry records that the original script had confidence intervals on QQ plots and richer highlighting than the released package ever regained.

◆ Prediction

With one packaging fix in the last decade, these entries support no prediction of further releases. The package reads as complete for its narrow purpose rather than abandoned mid-arc.

R
Rpath
ANALYTICS
0.0

Rpath 1.1.0 learns to read Ecopath's own files, easing migration off the desktop tool.

◆ Current state

Rpath is NOAA's R implementation of the Ecopath with Ecosim mass-balance equations for marine food web models. The feed is an archive backfill and arrives out of version order, with several entries carrying only a journal abstract instead of release notes. The substantive recent work is 1.0.0, which paired real ecosim bug fixes with the documentation and packaging expected of a 1.0, and 1.1.0, which adds .eiixml import and new balance estimation.

◆ Where it's heading

Development is moving from a faithful reimplementation of published equations toward a tool that can take over an existing modeling practice. Importing .eiixml files means models authored in the EwE desktop software no longer have to be rebuilt by hand, and the balance work reduces how many parameters a modeler must supply up front. The 1.0.0 release's contributor guidelines, issue templates and per-function examples point the same direction: preparing for users the maintainers do not personally know.

◆ Prediction

The next releases will likely widen the import path and tighten balance diagnostics, since 1.1.0 already spent effort on error messages for models missing parameters — the failure mode imported models will hit most.

Alternatives to qqman and Rpath

Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either qqman or Rpath.

See all qqman alternatives → · See all Rpath alternatives →

Recent activity from qqman and Rpath

Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.

  1. 11mo agoRpathRpath 1.1.0 imports EwE .eiixml models and estimates P/B
  2. 1y agoRpathRpath 1.0.0 fixes ecosim double-counting and completes docs
  3. 1y agoRpathRpath 0.6.0
  4. 1y agoRpathRpath 0.8.0 adds bioenergetics and monthly adjustments
  5. 1y agoRpathRpath 0.9.0
  6. 1y agoRpathRpath 0.9.1: documentation updates
  7. 9y agoqqmanREADME image path fix for pandoc
  8. 11y agoqqmanAnnotate SNPs by p-value threshold or per-chromosome top hit
  9. 11y agoqqmanChromosome ticks stop assuming even SNP spacing; axis control opens up
  10. 12y agoqqmanArchival tag for the pre-package standalone script
  11. 12y agoqqmanVignette touch-up
  12. 12y agoqqmanZenodo archival tag, no code change

Frequently asked questions

What is the difference between qqman and Rpath?

They serve adjacent needs but don't currently overlap on shipped themes. qqman and Rpath are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.

Is qqman better than Rpath?

Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. qqman and Rpath are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.

What are the best alternatives to qqman?

Top qqman alternatives in Analytics are ranked by recent ship velocity. Browse the "qqman alternatives" section above for the current picks, or visit /alternatives/qqman-r for the full list with editorial commentary on each.

What are the best alternatives to Rpath?

Top Rpath alternatives in Analytics are ranked by recent ship velocity. Browse the "Rpath alternatives" section above for the current picks, or visit /alternatives/rpath-r for the full list with editorial commentary on each.