ggalign
Composable aligned layouts, rebuilt on S7 while ggplot2 4.0 lands underneath.
Comparison · Infra & APIs
pr2database vs tf
A side-by-side editorial comparison of pr2database and tf — release velocity, themes, recent moves, and the top alternatives to consider.
pr2database vs tf: at a glance
What is pr2database?
The protist reference database keeps widening past the rRNA gene it was built on.
PR2 curates ribosomal reference sequences for eukaryotes, distributed as flat files and through a web interface, with each release crediting the specialists who curated individual clades. Since 2022 the structural changes have outweighed the curation: one combined SSU database replaced the separate ones, the taxonomy moved from eight levels to nine, and companion databases for ribosomal operons, mixoplankton and mitochondrial COI have been linked in.
What is tf?
tf gave functional data a second dimension: curves whose values are vectors.
tf supplies the vector classes underneath the tidyfun stack — tfd for raw functional observations, tfb for basis-represented ones, both built on vctrs so curves sit in a data frame column and behave like any other vector. Until July that codomain was scalar. The 0.5.0 release adds tfd_mv and tfb_mv, classes for functions whose values are vectors in R^d, and rebuilds the analysis verbs to match.
pr2database vs tf: editorial side-by-side
pr2database
0.0INFRA · APIS
The protist reference database keeps widening past the rRNA gene it was built on.
◆ Current state
PR2 curates ribosomal reference sequences for eukaryotes, distributed as flat files and through a web interface, with each release crediting the specialists who curated individual clades. Since 2022 the structural changes have outweighed the curation: one combined SSU database replaced the separate ones, the taxonomy moved from eight levels to nine, and companion databases for ribosomal operons, mixoplankton and mitochondrial COI have been linked in.
◆ Where it's heading
The database is becoming a hub rather than a single file. Each recent release integrates something maintained elsewhere, with the ROD, EukRibo, Mixoplankton and now eKOI databases reachable through the same interface, while the SSU flat files themselves change little between versions. Curation continues underneath, clade by clade, at a pace set by which specialist contributed that cycle.
◆ Prediction
Expect the next release to integrate or refresh another linked database while the SSU files see routine curation, following the pattern of the last three.
tf
0.0INFRA · APIS
tf gave functional data a second dimension: curves whose values are vectors.
◆ Current state
tf supplies the vector classes underneath the tidyfun stack — tfd for raw functional observations, tfb for basis-represented ones, both built on vctrs so curves sit in a data frame column and behave like any other vector. Until July that codomain was scalar. The 0.5.0 release adds tfd_mv and tfb_mv, classes for functions whose values are vectors in R^d, and rebuilds the analysis verbs to match.
◆ Where it's heading
The package is widening what a functional observation can be, then porting the toolkit onto it. Registration arrived first in 0.4.0 for univariate curves and immediately gained an srvf_mv method for aligning components jointly, and tfb_mfpc() ports principal component analysis to the multivariate case with a single set of scores shared across components. Alongside that runs steady dependency shedding — mvtnorm and pracma both replaced by inlined samplers that reproduce prior draws bit-for-bit, glue dropped for cli in the previous release — and an unusually long tail of NA-handling and edge-case fixes, several caught in pre-release review of the new classes.
◆ Prediction
The new classes ship with FPCA, registration and shape alignment but the release notes describe tidyfun::tf_unnest() as the consumer of one new export, so the visible next step is the rest of the tidyfun stack catching up to vector-valued columns. Expect follow-up patches on the vctrs casting paths, which is where most of this release's late fixes clustered.
Alternatives to pr2database and tf
Other Infra & APIs products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either pr2database or tf.
prioritizr
Conservation planning absorbs the literature's target-setting rules as code.
jSDM
Joint species distribution models in Gibbs-sampled C++, quiet since 2023.
rsofun
An ecosystem model starts tracking carbon isotopes and land-use change.
usmap
Ten years in, US mapping splits its data out and finally adds Puerto Rico.
trackeR
Fitness-tracking analysis in slow maintenance, still absorbing upstream breakage.
See all pr2database alternatives → · See all tf alternatives →
Recent activity from pr2database and tf
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 1mo agotfVector-valued functional data becomes a first-class type ⚡
- 5mo agotfCurve registration, five depth measures and sub-domain splitting
- 9mo agopr2databaseeKOI mitochondrial COI database reachable from the interface
- 1y agopr2databaseRibosomal Operon Database 1.2 integrated; ten clades curated
- 2y agotfFix: tf_crosscov normalization
- 2y agopr2databaseTaxonomy restructured from eight levels to nine ⚡
- 3y agopr2databaseNew web interface at app.pr2-database.org
- 4y agopr2databaseOne SSU database for nuclear, organelle and bacterial sequences ⚡
- 5y agopr2database2,966 sequences added and 3,817 removed across four clades
Frequently asked questions
What is the difference between pr2database and tf?
They serve adjacent needs but don't currently overlap on shipped themes. pr2database and tf are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is pr2database better than tf?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. pr2database and tf are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Infra & APIs products to evaluate alongside.
What are the best alternatives to pr2database?
Top pr2database alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "pr2database alternatives" section above for the current picks, or visit /alternatives/pr2database for the full list with editorial commentary on each.
What are the best alternatives to tf?
Top tf alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "tf alternatives" section above for the current picks, or visit /alternatives/tf for the full list with editorial commentary on each.