jSDM
Joint species distribution models in Gibbs-sampled C++, quiet since 2023.
Comparison · Infra & APIs
plssem vs selection.index
A side-by-side editorial comparison of plssem and selection.index — release velocity, themes, recent moves, and the top alternatives to consider.
plssem vs selection.index: at a glance
What is plssem?
plssem took PLS-SEM into multilevel data, then spent two releases making the estimates trustworthy.
plssem is a young R implementation of partial least squares structural equation modelling, three CRAN releases old and shipping monthly. Its distinguishing work is the MC-PLS family — consistent PLS estimators the maintainer extended to mixed-effects designs in June — and the releases since have been about getting standard errors, admissibility and fit measures onto the same footing as the point estimates.
What is selection.index?
A dormant plant-breeding package returns as a genomic selection index suite
selection.index computes selection indices for plant breeding — weighting several traits into one number breeders can rank on. After two years of silence it shipped 2.0.0 in March 2026, and the package is barely recognisable: snake_case throughout, an Rcpp and RcppEigen computational core, and index families for genomic data, marker data, multi-stage trials and constrained genetic gain sitting beside the original phenotypic ones.
plssem vs selection.index: editorial side-by-side
plssem
0.0INFRA · APIS
plssem took PLS-SEM into multilevel data, then spent two releases making the estimates trustworthy.
◆ Current state
plssem is a young R implementation of partial least squares structural equation modelling, three CRAN releases old and shipping monthly. Its distinguishing work is the MC-PLS family — consistent PLS estimators the maintainer extended to mixed-effects designs in June — and the releases since have been about getting standard errors, admissibility and fit measures onto the same footing as the point estimates.
◆ Where it's heading
The pattern is capability first, inference second. Multilevel MC-PLSc and MC-OrdPLSc arrived in 0.1.2 together with Monte-Carlo delta-method standard errors and a Polyak-Juditsky extrapolation step; 0.1.3 then extended delta-method errors to redundant parameters and thresholds, optimized their computation, added a loglikelihood-based fit measure and generated dynamic bounds to keep MC-PLS solutions admissible. Admissibility recurs throughout — penalized inadmissible solutions in 0.1.1, variance lower bounds and negative residual variance handling in 0.1.3, and an option to drop inadmissible bootstraps rather than silently include them. The release notes are pull-request lists, so the reasoning behind each change stays in the repository.
◆ Prediction
The MIMIC mode and GLS estimator both landed in the most recent release without the standard-error and fit-measure work that followed earlier additions, so extending inference to cover them is the natural next step. Bootstrap defaults moving to 500 replications suggests runtime is a live constraint and further optimization is likely.
selection.index
0.0INFRA · APIS
A dormant plant-breeding package returns as a genomic selection index suite
◆ Current state
selection.index computes selection indices for plant breeding — weighting several traits into one number breeders can rank on. After two years of silence it shipped 2.0.0 in March 2026, and the package is barely recognisable: snake_case throughout, an Rcpp and RcppEigen computational core, and index families for genomic data, marker data, multi-stage trials and constrained genetic gain sitting beside the original phenotypic ones.
◆ Where it's heading
The first version series added one function at a time — combinatorial indices, then genetic advance, then mean performance under randomised block designs — against a fixed phenotypic framing. Version 2.0.0 abandons that framing rather than extending it. Genomic and marker information become inputs the package understands, multi-cycle simulation becomes a built-in toolset, and the old combinatorial entry points are replaced by a named lpsi(). The 2.0.1 follow-up is entirely CI and numerical-stability work, which reads like a maintainer bracing a much larger surface.
◆ Prediction
A seventeen-runner CI matrix mirroring every CRAN check flavour, added days after 2.0.0, says the immediate concern is keeping a compiled multi-family package green rather than adding to it. Expect stabilisation releases before anything new.
Alternatives to plssem and selection.index
Other Infra & APIs products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either plssem or selection.index.
rsofun
An ecosystem model starts tracking carbon isotopes and land-use change.
usmap
Ten years in, US mapping splits its data out and finally adds Puerto Rico.
trackeR
Fitness-tracking analysis in slow maintenance, still absorbing upstream breakage.
states
State-panel tooling holding steady since its 2020 data and ergonomics release.
multimark
Five years of compiler and CRAN fixes on a capture-recapture package.
See all plssem alternatives → · See all selection.index alternatives →
Recent activity from plssem and selection.index
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 1mo agoplssemMIMIC mode, a GLS structural estimator and delta-method thresholds
- 2mo agoplssemMC-PLSc and MC-OrdPLSc extend to multilevel and mixed-effects models ⚡
- 3mo agoplssemParallel bootstrapping, kNN and mean imputation, higher-order constructs
- 5mo agoselection.indexCI expanded to 17 runners after the 2.0.0 rewrite
- 5mo agoselection.indexGenomic, marker and multi-stage selection indices on an Rcpp core ⚡
- 6mo agoselection.indexUnspecified general performance improvements
- 2y agoselection.indexMean performance for randomised block designs
- 3y agoselection.indexsel.index() and sel.score.rank() removed for comb.indices()
- 4y agoselection.indexGenetic advance calculation added
Frequently asked questions
What is the difference between plssem and selection.index?
They serve adjacent needs but don't currently overlap on shipped themes. plssem and selection.index are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is plssem better than selection.index?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. plssem and selection.index are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Infra & APIs products to evaluate alongside.
What are the best alternatives to plssem?
Top plssem alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "plssem alternatives" section above for the current picks, or visit /alternatives/plssem for the full list with editorial commentary on each.
What are the best alternatives to selection.index?
Top selection.index alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "selection.index alternatives" section above for the current picks, or visit /alternatives/selection-index for the full list with editorial commentary on each.