r2rtf
The clinical-report table engine learned Chinese, then learned to leave RTF entirely
Comparison · Analytics
pkglite vs serofoi
A side-by-side editorial comparison of pkglite and serofoi — release velocity, themes, recent moves, and the top alternatives to consider.
pkglite vs serofoi: at a glance
What is pkglite?
pkglite's whole job is knowing which files in an R package are text — and it keeps getting better at guessing.
pkglite packs an R package into a single plain-text file and unpacks it again, the mechanism pharmaceutical submissions use to move source through systems that accept text but not archives. The API settled at 0.2.0 with file specification templates, `merge()` and `prune()`. Every release since has improved the same thing: the dictionary that decides whether a file is text or binary, most recently rebuilt from the file extensions found across 21,369 CRAN packages.
What is serofoi?
serofoi grew a serosurvey simulator alongside the force-of-infection models it was built to fit.
serofoi estimates the force of infection from serological survey data using Bayesian serocatalytic models fitted through Stan. Beyond fitting it now simulates serosurveys — specifying a model and a survey design and generating the data such a survey would produce. The most recent release is visualisation and naming work.
pkglite vs serofoi: editorial side-by-side
pkglite
0.0ANALYTICS
pkglite's whole job is knowing which files in an R package are text — and it keeps getting better at guessing.
◆ Current state
pkglite packs an R package into a single plain-text file and unpacks it again, the mechanism pharmaceutical submissions use to move source through systems that accept text but not archives. The API settled at 0.2.0 with file specification templates, `merge()` and `prune()`. Every release since has improved the same thing: the dictionary that decides whether a file is text or binary, most recently rebuilt from the file extensions found across 21,369 CRAN packages.
◆ Where it's heading
The failure mode this package cares about is silent — misclassify a binary file as text and the round trip corrupts it, misclassify text as binary and it bloats or drops. So the work is empirical rather than architectural: mine real packages for what extensions actually appear, then widen coverage where specific ecosystems break the pattern. Stan interfaces via rstan brought `src/Makevars` and `src/Makefile` handling; machine learning frameworks brought their own binary formats. Dependencies have gone the other way, with cli removed and replaced by internal equivalents.
◆ Prediction
Expect the next substantive release to widen file specification coverage again for whatever package family the maintainers find breaking the default discovery, since that has been the content of every non-maintenance release for four years.
serofoi
0.0ANALYTICS
serofoi grew a serosurvey simulator alongside the force-of-infection models it was built to fit.
◆ Current state
serofoi estimates the force of infection from serological survey data using Bayesian serocatalytic models fitted through Stan. Beyond fitting it now simulates serosurveys — specifying a model and a survey design and generating the data such a survey would produce. The most recent release is visualisation and naming work.
◆ Where it's heading
The package moved from fitting-only to a fit-and-simulate pair. 0.1.0 added simulation from time- or age-varying force-of-infection trends and simplified the fitted object down to a Stan fit; 1.0.2 broadened simulation into full serosurvey generation with its own vignette. 1.0.3 then spent its effort on naming consistency and plotting options, which is what a package does once its scope is set.
◆ Prediction
With simulation and fitting both in place, the natural next step is tooling that closes the loop between them — recovery checks or study-design guidance built on simulated surveys.
Alternatives to pkglite and serofoi
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either pkglite or serofoi.
DoseFinding
New stewardship at openpharma, then two releases adding the methods MCP-Mod was missing
webmockr
The stubbing library added httr2 support, then spent a year cutting itself free of everything else
crul
crul took mocking back from webmockr and made it a property of the client itself
dendroNetwork
Six releases, six identical bodies — the feed carries the package abstract instead of release notes
chattr
chattr deleted every LLM integration it had written and outsourced the lot to ellmer
See all pkglite alternatives → · See all serofoi alternatives →
Recent activity from pkglite and serofoi
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 5mo agopkgliteMaintainer email and CI workflow updates
- 1y agoserofoiConstant FoI plots, r-hat plotting and shorter parameter names
- 1y agoserofoiSerological surveys can now be simulated end to end
- 1y agopkgliteHandles Stan-interfacing packages and ML binary formats
- 1y agopkgliteExtension dictionary rebuilt from 21,369 CRAN packages
- 2y agoserofoiSimulation functions added; fitted output simplified to a Stan fit
- 2y agopkgliteTest helpers moved to helper.R
- 3y agoserofoiFirst release: three force-of-infection models and the core modules
- 3y agopkgliteMore file types recognised; cli dependency dropped
- 5y agopkgliteFile collections gain merge, prune, and a tests template
Frequently asked questions
What is the difference between pkglite and serofoi?
They serve adjacent needs but don't currently overlap on shipped themes. pkglite and serofoi are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is pkglite better than serofoi?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. pkglite and serofoi are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to pkglite?
Top pkglite alternatives in Analytics are ranked by recent ship velocity. Browse the "pkglite alternatives" section above for the current picks, or visit /alternatives/pkglite for the full list with editorial commentary on each.
What are the best alternatives to serofoi?
Top serofoi alternatives in Analytics are ranked by recent ship velocity. Browse the "serofoi alternatives" section above for the current picks, or visit /alternatives/serofoi for the full list with editorial commentary on each.