← Back to home
Comparison · Infra & APIs

onemap vs squat

A side-by-side editorial comparison of onemap and squat — release velocity, themes, recent moves, and the top alternatives to consider.

onemap vs squat: at a glance

Featureonemapsquat
SectorInfra & APIsInfra & APIs
Velocity score0.00.0
Sparks · 30d00
Top themesgenetic-mapping, linkage-analysis, genotyping-by-sequencing, mappolyquaternions, functional-data, rotation, clustering
Last editorial update59m ago2h ago
WebsiteVisit →Visit →

What is onemap?

A genetic-mapping mainstay that now points new users toward MAPpoly at load time

OneMap constructs genetic linkage maps for experimental crosses, and its 3.x line turned it into a hub in a wider mapping toolchain: export functions for VIEWpoly and QTLpoly, summary and interactive ordering functions adapted from MAPpoly, and retention of reference and alternative allele information from imported VCFs. The most recent release, 3.2.0 in January 2025, adds an announcement about MAPpoly to the README and the package load message, fixes a subscript-out-of-bounds warning in rf_2pts and refreshes vignettes and tests.

Read the full onemap trajectory →

What is squat?

Quaternion time series got their own statistics package, and it is still filling in the toolbox.

squat treats a sequence of rotations as a statistical object: quaternion time series with means, medians, distances, principal components and clustering defined on them rather than on the raw coordinates. Version 0.5.0 adds derived representations, turning a QTS into a smooth b-spline curve or into angular velocity and acceleration. The release cadence is roughly annual.

Read the full squat trajectory →

onemap vs squat: editorial side-by-side

O
onemap
INFRA · APIS
0.0

A genetic-mapping mainstay that now points new users toward MAPpoly at load time

◆ Current state

OneMap constructs genetic linkage maps for experimental crosses, and its 3.x line turned it into a hub in a wider mapping toolchain: export functions for VIEWpoly and QTLpoly, summary and interactive ordering functions adapted from MAPpoly, and retention of reference and alternative allele information from imported VCFs. The most recent release, 3.2.0 in January 2025, adds an announcement about MAPpoly to the README and the package load message, fixes a subscript-out-of-bounds warning in rf_2pts and refreshes vignettes and tests.

◆ Where it's heading

Versions 3.0.0 and 3.1.0 were driven by a benchmarking preprint on genotyping-by-sequencing best practice, and their content follows directly: marker filtering from two-point estimates, memory reduction after filtering, and optimisation of find_bins and map_avoid_unlinked. What has happened since is signposting rather than capability — a package that spent two releases integrating with MAPpoly now tells users about it every time it loads. The pre-3.0 tags are backfilled, with versions 2.3 through 2.7 sharing a single August 2021 timestamp, so their order carries no information.

◆ Prediction

The load-message announcement suggests attention is flowing toward the MAPpoly side of the toolchain; expect maintenance and compatibility releases here rather than new mapping algorithms.

S
squat
INFRA · APIS
0.0

Quaternion time series got their own statistics package, and it is still filling in the toolbox.

◆ Current state

squat treats a sequence of rotations as a statistical object: quaternion time series with means, medians, distances, principal components and clustering defined on them rather than on the raw coordinates. Version 0.5.0 adds derived representations, turning a QTS into a smooth b-spline curve or into angular velocity and acceleration. The release cadence is roughly annual.

◆ Where it's heading

Each release has added either a representation or a way to compare series. First the class and the core statistical methods, then clustering algorithms and distance matrices, then quaternion algebra and axis-angle conversion, then rotation-invariant elastic distance and roll-pitch-yaw. The package is broadening the input side, so that data arriving in any of the usual rotation encodings can enter the same analysis. Dependency reduction runs alongside, with purrr and furrr swapped out for base and future.apply.

◆ Prediction

Given the pattern, the next additions are most likely further transformations and distances rather than new inference machinery. The tight coupling to fdacluster, which the notes repeatedly adapt to, means that package's API is the main external constraint on timing.

Alternatives to onemap and squat

Other Infra & APIs products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either onemap or squat.

See all onemap alternatives → · See all squat alternatives →

Recent activity from onemap and squat

Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.

  1. 7mo agosquatSmoothing, angular velocity and acceleration transforms added
  2. 1y agosquatRotation-invariant elastic distance and roll-pitch-yaw support
  3. 1y agoonemapMAPpoly announcement added to README and load message
  4. 2y agosquatQuaternion algebra and axis-angle conversion added
  5. 3y agosquatFence robustification option and correct tangent spaces
  6. 3y agoonemapExports to VIEWpoly and QTLpoly; marker ordering and map summaries
  7. 3y agosquatHierarchical and DBSCAN clustering join k-means
  8. 3y agosquatFirst API defines quaternion time series as a statistical object
  9. 3y agoonemapTwo-point marker filtering and memory reduction
  10. 4y agoonemapPSOCK and FORK parallelization choice; vcfR as an import
  11. 5y agoonemaphmm=FALSE option for ordering algorithms
  12. 5y agoonemapMDSMap dependency removed

Frequently asked questions

What is the difference between onemap and squat?

They serve adjacent needs but don't currently overlap on shipped themes. onemap and squat are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.

Is onemap better than squat?

Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. onemap and squat are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Infra & APIs products to evaluate alongside.

What are the best alternatives to onemap?

Top onemap alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "onemap alternatives" section above for the current picks, or visit /alternatives/onemap for the full list with editorial commentary on each.

What are the best alternatives to squat?

Top squat alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "squat alternatives" section above for the current picks, or visit /alternatives/squat for the full list with editorial commentary on each.