paleobuddy
paleobuddy can now simulate trait-dependent diversification, not just birth-death.
A side-by-side editorial comparison of NWCTrends and SimInf — release velocity, themes, recent moves, and the top alternatives to consider.
The salmon status-review trend package, maintained one federal review cycle at a time
NWCTrends fits multivariate state-space trend models to Pacific salmon population data and generates the tables and figures used in NOAA Northwest Fisheries Science Center viability and status reviews. Its release history maps onto those review cycles rather than a development calendar: v1.0 carries the 2015 review code, v1.25 the 2020 review, v1.30 the changes since. The 2026 v1.31 is internal restructuring and a dependency swap.
SimInf 10.0 turns an epidemic simulator into a tool that fits models to real time series
SimInf simulates stochastic disease spread over networks of nodes, with a model parser that compiles user-specified transitions to C. Version 10.0.0 was a deliberate major break: the SimInf_pfilter S4 class and the bootstrap filtering interface were redesigned, a replicates slot was added to SimInf_model, a multi-particle variant of the split-step solver arrived, and the package gained Particle Markov Chain Monte Carlo fitting against observed time series. The follow-up 10.1.0 is a single zero-length memcpy fix found by CRAN's M1 checks.
NWCTrends fits multivariate state-space trend models to Pacific salmon population data and generates the tables and figures used in NOAA Northwest Fisheries Science Center viability and status reviews. Its release history maps onto those review cycles rather than a development calendar: v1.0 carries the 2015 review code, v1.25 the 2020 review, v1.30 the changes since. The 2026 v1.31 is internal restructuring and a dependency swap.
Development is driven by reproducibility of a specific government reporting product, so most work goes into making the report generation configurable and the fitting assumptions explicit rather than into new modelling. The 2020 cycle removed hard-coded per-population hacks and made the fitting window an explicit argument; the 2023 cycle moved plot styling into package options and clarified how missing data and zeros are handled in the published tables.
The cadence suggests the next substantive release arrives with the next status review rather than before it, most likely continuing the move of report parameters out of function signatures and into structured configuration.
SimInf simulates stochastic disease spread over networks of nodes, with a model parser that compiles user-specified transitions to C. Version 10.0.0 was a deliberate major break: the SimInf_pfilter S4 class and the bootstrap filtering interface were redesigned, a replicates slot was added to SimInf_model, a multi-particle variant of the split-step solver arrived, and the package gained Particle Markov Chain Monte Carlo fitting against observed time series. The follow-up 10.1.0 is a single zero-length memcpy fix found by CRAN's M1 checks.
The package has been moving from simulation toward inference for several releases. The 9.x line built the input side — utilities for cleaning raw individual event data, variables and enumeration constants in the model parser — and 10.0.0 closed the loop by making the simulator fittable to data through PMCMC. The version number was incremented precisely because that required breaking the particle filter interface.
Fitting machinery this new usually needs a second pass on usability, so the next releases most likely focus on diagnostics and documentation around PMCMC rather than on the simulation core, which has been stable across the whole 9.x and 10.x history.
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either NWCTrends or SimInf.
paleobuddy can now simulate trait-dependent diversification, not just birth-death.
geodist stays dependency-free and fast, and warns you when 'cheap' distances stop being honest.
errors keeps making uncertainty print the way each scientific field expects.
CMAQ went global in v5.5, and has been patching that surface ever since.
enpls has not changed its statistics since 2016 — only its website, twice.
grex is a lookup table with a version number — it ships when the annotation moves.
See all NWCTrends alternatives → · See all SimInf alternatives →
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
Both compete on the same themes — r-package — within Analytics. NWCTrends and SimInf are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. NWCTrends and SimInf are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
Top NWCTrends alternatives in Analytics are ranked by recent ship velocity. Browse the "NWCTrends alternatives" section above for the current picks, or visit /alternatives/nwctrends-r for the full list with editorial commentary on each.
Top SimInf alternatives in Analytics are ranked by recent ship velocity. Browse the "SimInf alternatives" section above for the current picks, or visit /alternatives/siminf-r for the full list with editorial commentary on each.