mrbayes vs spatstat.model

spatstat.model fits point process models and provides the diagnostics that go with them. The recent window is dominated by determinantal point process work — a variance-covariance matrix and more diagnostics in 3.7-2, additional `intensity` and `repul` methods in 3.7-1, and ROC curves for determinantal models in 3.5-0. Cluster and Cox process inference has advanced in parallel, with Waagepetersen's composite likelihood arriving in 3.6-1.

The pattern is that model classes enter the package as fitting machinery first and only later gain the apparatus that makes them usable in practice — standard errors, diagnostics, residuals, model checking. Determinantal processes are visibly midway through that progression, reaching variance-covariance estimation only in the most recent release. Around this, the package has been broadening where models can be fitted at all: replicated point patterns on linear networks in 3.5-0, extended spatial logistic regression, and conversion of recursively partitioned models to tessellations.

Expect determinantal model support to keep filling out along the same path other model classes took, since variance estimation has only just arrived and partial residuals already exist for the cluster and Cox families. The entries do not signal a move into three dimensions here, unlike the geometry and simulation packages.