bkmrhat
A parallel-chain helper for bkmr that has settled into pure upkeep.
Comparison · Infra & APIs
microeco vs profoc
A side-by-side editorial comparison of microeco and profoc — release velocity, themes, recent moves, and the top alternatives to consider.
Shared themes:r-package
microeco vs profoc: at a glance
What is microeco?
A microbiome analysis framework quietly grew a metabolomics half
microeco is a class-based R framework for microbial community data, organised as trans_* analysis objects layered over a microtable container. The 2.x line added trans_metab for metabolomics in 2.1.0, built pathway calculation, enrichment and network functions onto it in 2.2.0, and reached 2.3.0 with trans_niche and trans_phylo classes plus graphml export from the network module. Release notes are dense bullet lists where a handful of new classes sit among fifteen to twenty parameter fixes.
What is profoc?
A forecast combination package that spun its profiler out into its own project
profoc combines probabilistic forecasts online, using the Bernstein online aggregation family with B-spline smoothing over quantiles and time. The recent releases are infrastructure rather than method: 1.3.4 removed a using namespace arma directive for CRAN compliance and closed a timer edge case, 1.3.3 adjusted the integration with rcpptimer against its now-stable 1.2.0 API. The last release to change what users can do was 1.3.0, which exposed the conline C++ class to R and exported init_experts_list(), make_basis_mats(), make_hat_mats() and post_process_model() so the engine can be driven directly.
microeco vs profoc: editorial side-by-side
microeco
0.0INFRA · APIS
A microbiome analysis framework quietly grew a metabolomics half
◆ Current state
microeco is a class-based R framework for microbial community data, organised as trans_* analysis objects layered over a microtable container. The 2.x line added trans_metab for metabolomics in 2.1.0, built pathway calculation, enrichment and network functions onto it in 2.2.0, and reached 2.3.0 with trans_niche and trans_phylo classes plus graphml export from the network module. Release notes are dense bullet lists where a handful of new classes sit among fifteen to twenty parameter fixes.
◆ Where it's heading
The package expands by adding analysis classes rather than rewriting existing ones, and the 2.x series widened its scope from microbial community structure to paired omics. trans_metab was the pivot; niche and phylogenetic classes in 2.3.0 extend the original microbiome side in parallel. Alongside that, a long maintenance thread tracks upstream churn - linewidth replacing size for ggplot2 v4.0, igraph namespace changes, lifecycle deprecations - which accounts for most of the bullet volume in any given release.
◆ Prediction
Expect further trans_* classes filling gaps around the metabolomics arm, since every 2.x release so far has introduced at least one new class alongside its fix list.
profoc
0.0INFRA · APIS
A forecast combination package that spun its profiler out into its own project
◆ Current state
profoc combines probabilistic forecasts online, using the Bernstein online aggregation family with B-spline smoothing over quantiles and time. The recent releases are infrastructure rather than method: 1.3.4 removed a using namespace arma directive for CRAN compliance and closed a timer edge case, 1.3.3 adjusted the integration with rcpptimer against its now-stable 1.2.0 API. The last release to change what users can do was 1.3.0, which exposed the conline C++ class to R and exported init_experts_list(), make_basis_mats(), make_hat_mats() and post_process_model() so the engine can be driven directly.
◆ Where it's heading
The direction is toward a reusable C++ core with thin language bindings. The timing code that lived inside profoc was extracted into the standalone rcpptimer package in 1.3.2, deliberately so other R packages and Python projects could use it through cpptimer and cppytimer, and the clock header was reworked in 1.3.1 to maximise the code shared between the R and Python versions. Method work sits earlier in the history - periodic splines and penalties in 1.2.0, the penalty() function in 1.1.0 - while the recent cadence, a single release in the last sixteen months, points at a package the maintainer considers finished.
◆ Prediction
The repeated references to future Python use suggest the next significant work happens outside this package, in the shared C++ components, rather than in profoc's R surface.
Alternatives to microeco and profoc
Other Infra & APIs products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either microeco or profoc.
driveR
A cancer driver prioritization package that ships rarely and mostly to stay installable
metR
A meteorology ggplot2 extension where the netCDF reader became the main event
IsoriX
An isotope geolocation package still recovering from the r-spatial retirement
fdacluster
Functional data clustering grew from one algorithm into a comparable suite
adjustedCurves
A survival curve package spending release after release correcting its own estimates
See all microeco alternatives → · See all profoc alternatives →
Recent activity from microeco and profoc
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 1mo agomicroecoNiche and phylogenetic analysis classes join the framework
- 3mo agomicroecoPathway calculation, enrichment and network functions build out trans_metab
- 4mo agomicroecotrans_metab class brings metabolomics into a microbiome framework ⚡
- 6mo agomicroecoStatistical functions gain direct visualization, plus a volcano plot
- 6mo agoprofocCRAN compliance fix removing a namespace directive
- 9mo agomicroecoggplot2 v4.0 compatibility pass plus network and normalization options
- 1y agomicroecoParameter renames and namespace fixes across the trans_ classes
- 1y agoprofocTimer integration updated to the stable rcpptimer API
- 2y agoprofocTiming code extracted into the standalone rcpptimer package
- 2y agoprofocInteger overflow fix and Welford timing statistics
- 2y agoprofocThe conline C++ class opens up to R users
- 2y agoprofocQuantile crossing flagged and tidy methods added
Frequently asked questions
What is the difference between microeco and profoc?
Both compete on the same themes — r-package — within Infra & APIs. microeco and profoc are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is microeco better than profoc?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. microeco and profoc are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Infra & APIs products to evaluate alongside.
What are the best alternatives to microeco?
Top microeco alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "microeco alternatives" section above for the current picks, or visit /alternatives/microeco for the full list with editorial commentary on each.
What are the best alternatives to profoc?
Top profoc alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "profoc alternatives" section above for the current picks, or visit /alternatives/profoc for the full list with editorial commentary on each.