glymotif
A glycan motif matcher trading convenience wrappers for speed, strictness and explicit specs.
Comparison · Analytics
ibdsim2 vs vellumwidget
A side-by-side editorial comparison of ibdsim2 and vellumwidget — release velocity, themes, recent moves, and the top alternatives to consider.
Shared themes:shiny
ibdsim2 vs vellumwidget: at a glance
What is ibdsim2?
A pedigree IBD simulator that absorbed its own web app and now optimises for dense marker panels.
ibdsim2 simulates identity-by-descent sharing along chromosomes for arbitrary pedigrees, in both autosomal and X-chromosomal form, with downstream tools for segment statistics, pattern finding and distribution plots. Since 2.1.0 the Shiny front end lives inside the package and launches via launchApp() rather than sitting in a separate repository. The latest release is performance work, with profileSimIBD() substantially sped up for dense marker panels and ibdsim() skipping recombination in pedigree branches that cannot affect the result.
What is vellumwidget?
vellumwidget is dissolving its own API: interaction now lives in the plot spec, not the widget call.
vellumwidget compiles a vellum scene or a vellumplot plot into a self-contained client-side htmlwidget with hover, select, brush, lasso, pan/zoom and export, and no server round-trip. The two-way Shiny story is complete: interactions surface as reactive inputs keyed by output id, and vellumwidget_proxy() drives an already-rendered widget from the server without re-rendering it. The last two releases are fidelity work rather than new surface, calibrating hit-testing from the rendered positions of marks and rendering the raster base image at 2x for HiDPI screens.
ibdsim2 vs vellumwidget: editorial side-by-side
ibdsim2
2.5ANALYTICS
A pedigree IBD simulator that absorbed its own web app and now optimises for dense marker panels.
◆ Current state
ibdsim2 simulates identity-by-descent sharing along chromosomes for arbitrary pedigrees, in both autosomal and X-chromosomal form, with downstream tools for segment statistics, pattern finding and distribution plots. Since 2.1.0 the Shiny front end lives inside the package and launches via launchApp() rather than sitting in a separate repository. The latest release is performance work, with profileSimIBD() substantially sped up for dense marker panels and ibdsim() skipping recombination in pedigree branches that cannot affect the result.
◆ Where it's heading
Two long-running threads. One is the app as a first-class part of the package, which has been getting input validation, dependency checks and plotting fixes release after release, treating a research GUI as software to be maintained rather than a demo. The other is numerical care: the built-in recombination map was rebuilt in 2.3.0 with better chromosome endpoints and a thinning algorithm that cut it from about 38,000 points to 14,000 without losing accuracy, and IBD segment merging has been made consistent across the realised-coefficient functions. The maintainer flags repeatedly that seeded results may differ across versions, which is the right disclosure for a simulator used in published analyses.
◆ Prediction
The recent work points at further speed on dense panels and continued hardening of app input handling, both of which have appeared in each of the last several releases. Nothing here signals a new modelling capability on the way.
vellumwidget
6.3ANALYTICS
vellumwidget is dissolving its own API: interaction now lives in the plot spec, not the widget call.
◆ Current state
vellumwidget compiles a vellum scene or a vellumplot plot into a self-contained client-side htmlwidget with hover, select, brush, lasso, pan/zoom and export, and no server round-trip. The two-way Shiny story is complete: interactions surface as reactive inputs keyed by output id, and vellumwidget_proxy() drives an already-rendered widget from the server without re-rendering it. The last two releases are fidelity work rather than new surface, calibrating hit-testing from the rendered positions of marks and rendering the raster base image at 2x for HiDPI screens.
◆ Where it's heading
The direction is declarative. 0.7.0 removed the interaction-intent arguments from as_widget() outright, dropping the signature from roughly 36 arguments to 24 and moving highlight, filter and cross-filter into vellumplot's spec via select_point(), condition() and filter_by(). Each release since has enacted more of that compiled spec on the frozen scene, from conditional encodings to single-view filters to cross-view cross-filtering, leaving the widget as an interpreter of the plot rather than a configuration surface of its own. The bug fixes track the same theme the engine's do: measured geometry and rendered geometry must not drift.
◆ Prediction
The notes name the remaining hold-outs explicitly, saying hover_mode, crosshair, legend_click, select_mode and the tooltip-appearance arguments remain only until their spec equivalents land, so the next releases most likely move those into vellumplot and shrink as_widget() further. The scale binds flagged as following the filter work are the other stated next step.
Alternatives to ibdsim2 and vellumwidget
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either ibdsim2 or vellumwidget.
glyrepr
The type system the rest of the glycan stack is built on, being hardened one breaking change at a time.
glyanno
Glycan annotation stops depending on the database having seen the structure before.
glydraw
SNFG glycan cartoons stopped being pictures and became ggplot2 geoms, guides and axis labels.
glyenzy
Glycan biosynthesis as a traceable enzyme graph, now including sulfation and gaps it can bridge.
KLINK
Forensic kinship testing with linked STR markers, now peer-reviewed and taking data from anywhere.
See all ibdsim2 alternatives → · See all vellumwidget alternatives →
Recent activity from ibdsim2 and vellumwidget
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 11d agoibdsim2profileSimIBD() sped up for dense marker panels; segment merging fixed
- 14d agovellumwidget2x raster base image for HiDPI, and exact element hit-testing
- 20d agovellumwidgetInteraction moves into the plot spec; as_widget() sheds a third of its arguments ⚡
- 27d agovellumwidgetAxis-aware zoom re-ticks the axes instead of scaling the whole scene
- 1mo agovellumwidgetSelectable native SVG text, and crisp canvas redraw when zooming raster
- 1mo agovellumwidgetServer-side proxy drives a rendered widget without re-rendering it
- 1mo agovellumwidgetShiny input read-back, and keyboard plus screen-reader access by default
- 8mo agoibdsim2Segment-distribution merge argument, and function-valued parameters
- 1y agoibdsim2Built-in decode19 recombination map rebuilt, cutting 38k points to 14k
- 1y agoibdsim2Consistent IBD segment merging across the realised-coefficient functions
- 1y agoibdsim2Built-in pedigree labels revised; extra inbred examples added
- 1y agoibdsim2The Shiny front end moves into the package and gains X-chromosomal simulation ⚡
Frequently asked questions
What is the difference between ibdsim2 and vellumwidget?
Both compete on the same themes — shiny — within Analytics. vellumwidget is currently shipping more aggressively (velocity 6.3 vs 2.5), with 1 editorial sparks in the last 30 days against 0. See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is ibdsim2 better than vellumwidget?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. vellumwidget is currently shipping more aggressively (velocity 6.3 vs 2.5), with 1 editorial sparks in the last 30 days against 0. For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to ibdsim2?
Top ibdsim2 alternatives in Analytics are ranked by recent ship velocity. Browse the "ibdsim2 alternatives" section above for the current picks, or visit /alternatives/ibdsim2 for the full list with editorial commentary on each.
What are the best alternatives to vellumwidget?
Top vellumwidget alternatives in Analytics are ranked by recent ship velocity. Browse the "vellumwidget alternatives" section above for the current picks, or visit /alternatives/vellumwidget for the full list with editorial commentary on each.