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hstats vs qqman

A side-by-side editorial comparison of hstats and qqman — release velocity, themes, recent moves, and the top alternatives to consider.

hstats vs qqman: at a glance

Featurehstatsqqman
SectorAnalyticsAnalytics
Velocity score0.00.0
Sparks · 30d00
Top themesinteraction statistics, partial dependence, model explainability, r packagegwas, genomics, manhattan-plot, visualization
Last editorial update11h ago1h ago
WebsiteVisit →Visit →

What is hstats?

hstats settled into maintenance after its 1.0 restructuring, with model coverage the only thing still growing.

hstats computes Friedman's H-statistics, partial dependence, ICE curves and permutation importance for any model exposing a prediction function. The releases in view are consolidation: performance work on plain data.frames, ICE facetting for multioutput models, ranger survival support, and a ggplot 4.0 compatibility pass in 2025. The package moved to the ModelOriented organisation in 1.2.0.

Read the full hstats trajectory →

What is qqman?

The Manhattan-plot package for GWAS results, finished and dormant since 2017.

qqman does two things: manhattan() and qq() plots for genome-wide association study results. Its six visible releases run from 2014 to a single 2017 packaging fix, and the last release with any user-facing change shipped in 2015. The archive is non-monotonic — a 0.0.0 tag published after 0.1.1 archives the pre-package standalone script — so version order and publication order disagree.

Read the full qqman trajectory →

hstats vs qqman: editorial side-by-side

H
hstats
ANALYTICS
0.0

hstats settled into maintenance after its 1.0 restructuring, with model coverage the only thing still growing.

◆ Current state

hstats computes Friedman's H-statistics, partial dependence, ICE curves and permutation importance for any model exposing a prediction function. The releases in view are consolidation: performance work on plain data.frames, ICE facetting for multioutput models, ranger survival support, and a ggplot 4.0 compatibility pass in 2025. The package moved to the ModelOriented organisation in 1.2.0.

◆ Where it's heading

The structural work — the hstats_matrix object, quantile approximation, revised plotting — landed in 1.0.0 just outside this window, and nothing since has changed the package's shape. What continues is model-coverage plumbing: mlr3 classification modes, ranger survival behind a survival argument, and factor predictions added in 1.1.0 then removed again in 1.2.0. The most recent releases are compatibility-driven, tracking ggplot2 rather than the interaction statistics.

◆ Prediction

Expect the next release to be another dependency-compatibility pass or a new model backend working out of the box, rather than new interaction statistics.

Q
qqman
ANALYTICS
0.0

The Manhattan-plot package for GWAS results, finished and dormant since 2017.

◆ Current state

qqman does two things: manhattan() and qq() plots for genome-wide association study results. Its six visible releases run from 2014 to a single 2017 packaging fix, and the last release with any user-facing change shipped in 2015. The archive is non-monotonic — a 0.0.0 tag published after 0.1.1 archives the pre-package standalone script — so version order and publication order disagree.

◆ Where it's heading

The real development window was 2014 to 2015. The 0.1.2 release did the substantive work, replacing the assumption that SNPs are evenly distributed across chromosomes and handing users control of axis limits, labels and log transformation; 0.1.3 then added annotation by p-value threshold and top-SNP-per-chromosome. After that the package stops. Notably, the archival 0.0.0 entry records that the original script had confidence intervals on QQ plots and richer highlighting than the released package ever regained.

◆ Prediction

With one packaging fix in the last decade, these entries support no prediction of further releases. The package reads as complete for its narrow purpose rather than abandoned mid-arc.

Alternatives to hstats and qqman

Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either hstats or qqman.

See all hstats alternatives → · See all qqman alternatives →

Recent activity from hstats and qqman

Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.

  1. 10mo agohstatsggplot 4.0 compatibility and test coverage
  2. 1y agohstatsranger survival models supported out of the box
  3. 2y agohstatsMoves to ModelOriented; factor predictions removed
  4. 2y agohstatsICE facets for multioutput models; mlr3 fixes
  5. 2y agohstatsFaster data.frame paths; NaN H-statistics fixed
  6. 2y agohstatsFactor predictions and line-style 2D partial dependence
  7. 9y agoqqmanREADME image path fix for pandoc
  8. 11y agoqqmanAnnotate SNPs by p-value threshold or per-chromosome top hit
  9. 11y agoqqmanChromosome ticks stop assuming even SNP spacing; axis control opens up
  10. 12y agoqqmanArchival tag for the pre-package standalone script
  11. 12y agoqqmanVignette touch-up
  12. 12y agoqqmanZenodo archival tag, no code change

Frequently asked questions

What is the difference between hstats and qqman?

They serve adjacent needs but don't currently overlap on shipped themes. hstats and qqman are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.

Is hstats better than qqman?

Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. hstats and qqman are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.

What are the best alternatives to hstats?

Top hstats alternatives in Analytics are ranked by recent ship velocity. Browse the "hstats alternatives" section above for the current picks, or visit /alternatives/hstats for the full list with editorial commentary on each.

What are the best alternatives to qqman?

Top qqman alternatives in Analytics are ranked by recent ship velocity. Browse the "qqman alternatives" section above for the current picks, or visit /alternatives/qqman-r for the full list with editorial commentary on each.