TAF
TAF keeps turning ICES stock assessments into reproducible, dependency-pinned projects.
Comparison · Analytics
gwasvcf vs tidytab
A side-by-side editorial comparison of gwasvcf and tidytab — release velocity, themes, recent moves, and the top alternatives to consider.
gwasvcf vs tidytab: at a glance
What is gwasvcf?
gwasvcf has stopped adding features and now just keeps proxy matching from failing.
gwasvcf reads and queries GWAS summary statistics stored as VCF, with LD proxy lookup as its most-used entry point. Every release in the visible window is a fix, and all but one land in or around proxy_match(). The last functional addition was gwasvcf_to_summaryset() in 0.1.2, which hands data to gwasglue2 rather than doing new work here.
What is tidytab?
A young tabulation helper whose first releases are all dependency modernisation
tidytab is a small R package for tidyverse-style tabulation, three releases into its public life. Nothing so far has added functionality: 0.2.0 fixed a cumulative-percentage calculation and moved to the base R pipe, and 0.3.0 swapped a retired purrr function for tidyr::expand_grid. The one substantive user-facing item in the history is the cumulative percentage fix.
gwasvcf vs tidytab: editorial side-by-side
gwasvcf
0.0ANALYTICS
gwasvcf has stopped adding features and now just keeps proxy matching from failing.
◆ Current state
gwasvcf reads and queries GWAS summary statistics stored as VCF, with LD proxy lookup as its most-used entry point. Every release in the visible window is a fix, and all but one land in or around proxy_match(). The last functional addition was gwasvcf_to_summaryset() in 0.1.2, which hands data to gwasglue2 rather than doing new work here.
◆ Where it's heading
The package is in custodial maintenance inside the MRC IEU OpenGWAS stack, and its releases are reactive: each one answers a specific user-reported failure, credited to the reporter. The 0.1.6 pattern is telling — rather than replace the proxy VCF construction, it keeps the original path and adds a fallback only for inputs that fail, so existing results are left bit-for-bit unchanged.
◆ Prediction
Expect further narrow robustness fixes to proxy_match() driven by user-reported VCF shapes; nothing in the entries suggests new analysis capability is being built here rather than in gwasglue2.
tidytab
0.0ANALYTICS
A young tabulation helper whose first releases are all dependency modernisation
◆ Current state
tidytab is a small R package for tidyverse-style tabulation, three releases into its public life. Nothing so far has added functionality: 0.2.0 fixed a cumulative-percentage calculation and moved to the base R pipe, and 0.3.0 swapped a retired purrr function for tidyr::expand_grid. The one substantive user-facing item in the history is the cumulative percentage fix.
◆ Where it's heading
The package is being brought up to current tidyverse conventions by a wave of first-time contributors — six of them in 0.2.0 alone — rather than developed by a sustained maintainer effort. That makes the near-term direction predictable and narrow: retire deprecated idioms, keep CRAN checks clean. There is not yet enough history to say what the package intends to become.
◆ Prediction
With deprecated tidyselect and purrr usage now cleared, the remaining work of this kind is thin, so the next release will show whether the contributor interest converts into new tabulation features or the package settles at its current surface.
Alternatives to gwasvcf and tidytab
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either gwasvcf or tidytab.
parallelDist
parallelDist is in pure preservation mode — one build fix every few years.
cairo
Cairo finally catches R's graphics engine, all the way to GE API 16.
rjdqa
rjdqa keeps refining one screen: the seasonal adjustment quality dashboard
epikit
epikit narrows to field-epidemiology helpers, handing proportions to a sibling package
SimInf
SimInf 10.0 turns an epidemic simulator into a tool that fits models to real time series
See all gwasvcf alternatives → · See all tidytab alternatives →
Recent activity from gwasvcf and tidytab
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 5mo agogwasvcfproxy_match() gains a fallback VCF construction path
- 7mo agotidytabpurrr::cross2() replaced with tidyr::expand_grid()
- 8mo agotidytabCumulative percentage fixed; base pipe replaces magrittr
- 8mo agogwasvcfproxy_match() handles multi-sample VCFs
- 9mo agotidytabNEWS.md added to track changes
- 1y agogwasvcfsqlite3 declared in SystemRequirements
- 1y agogwasvcfMessage fix in get_ld_proxies()
- 2y agogwasvcfgwasvcf_to_summaryset() bridges to gwasglue2
Frequently asked questions
What is the difference between gwasvcf and tidytab?
They serve adjacent needs but don't currently overlap on shipped themes. gwasvcf and tidytab are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is gwasvcf better than tidytab?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. gwasvcf and tidytab are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to gwasvcf?
Top gwasvcf alternatives in Analytics are ranked by recent ship velocity. Browse the "gwasvcf alternatives" section above for the current picks, or visit /alternatives/gwasvcf for the full list with editorial commentary on each.
What are the best alternatives to tidytab?
Top tidytab alternatives in Analytics are ranked by recent ship velocity. Browse the "tidytab alternatives" section above for the current picks, or visit /alternatives/tidytab-r for the full list with editorial commentary on each.