qqman
The Manhattan-plot package for GWAS results, finished and dormant since 2017.
Comparison · Analytics
gtfstools vs mrbayes
A side-by-side editorial comparison of gtfstools and mrbayes — release velocity, themes, recent moves, and the top alternatives to consider.
Shared themes:r-package
gtfstools vs mrbayes: at a glance
What is gtfstools?
gtfstools stopped guarding its own object model and started accepting everyone else's.
gtfstools reads, edits, filters and validates GTFS public transport feeds in R on a data.table backend. Since 1.3.0 it accepts GTFS objects produced by other packages such as gtfsio and tidytransit, converting them through an as_dt_gtfs() generic. Validation runs MobilityData's canonical validator, now supported through v6.0.0.
What is mrbayes?
mrbayes spent 2026 auditing its own Bayesian MR estimators for coding errors.
mrbayes wraps Stan and JAGS implementations of Bayesian Mendelian randomization estimators — IVW, MR-Egger, radial Egger, and their multivariable forms. Most of the visible history is packaging work: dependency trimming, conditional examples so the package installs where JAGS will not compile, a maintainer handover. The 0.5.3 release in July 2026 breaks that pattern with a dense list of fixes inside the model code itself.
gtfstools vs mrbayes: editorial side-by-side
gtfstools
0.0ANALYTICS
gtfstools stopped guarding its own object model and started accepting everyone else's.
◆ Current state
gtfstools reads, edits, filters and validates GTFS public transport feeds in R on a data.table backend. Since 1.3.0 it accepts GTFS objects produced by other packages such as gtfsio and tidytransit, converting them through an as_dt_gtfs() generic. Validation runs MobilityData's canonical validator, now supported through v6.0.0.
◆ Where it's heading
The package built out a wide function surface first — filters, geometry conversion, speed and duration calculations — then turned outward. Delegating validation to MobilityData's validator and accepting other packages' objects both trade self-sufficiency for a position inside the wider GTFS ecosystem. Deprecations are handled slowly, with old behaviour left as the default for a release or more.
◆ Prediction
Expect continued validator version tracking and further completion of the deprecation cycle around filter_by_stop_id()'s full_trips behaviour.
mrbayes
0.0ANALYTICS
mrbayes spent 2026 auditing its own Bayesian MR estimators for coding errors.
◆ Current state
mrbayes wraps Stan and JAGS implementations of Bayesian Mendelian randomization estimators — IVW, MR-Egger, radial Egger, and their multivariable forms. Most of the visible history is packaging work: dependency trimming, conditional examples so the package installs where JAGS will not compile, a maintainer handover. The 0.5.3 release in July 2026 breaks that pattern with a dense list of fixes inside the model code itself.
◆ Where it's heading
The package has moved from packaging upkeep into a correctness-audit phase. 0.5.3 fixes a hardcoded three-exposure loop in MVMR-Egger reporting, a broken joint-prior branch, a sigma parameterization error in radial Egger, and several prior specifications — the profile of a maintainer reading their own model files closely rather than responding to bug reports. Platform work continues underneath: an R 4.3.0 floor inherited through a transitive dependency chain, and segfault fixes on macOS ARM.
◆ Prediction
Expect further audit-driven patches to the remaining rjags and Stan model files rather than new estimators; the fixes in 0.5.3 cluster in the Egger variants, which suggests that is where the reading is still in progress.
Alternatives to gtfstools and mrbayes
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either gtfstools or mrbayes.
constants
The R package for CODATA constants rebuilt its symbol table on NIST's naming so future updates stop being hand work.
austraits
The R client for AusTraits spends its releases chasing the dataset it reads.
ggdemetra
A ggplot2 layer for seasonal adjustment output, filling in one plot type at a time.
fossilsim
A fossil-record simulator that quietly grew a trait-evolution engine.
tern.rbmi
Reference-based multiple imputation tables, shipping only what CRAN checks demand.
See all gtfstools alternatives → · See all mrbayes alternatives →
Recent activity from gtfstools and mrbayes
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 1mo agomrbayesEstimator audit fixes MVMR-Egger loops and radial Egger sigma
- 1y agogtfstoolsSupports canonical GTFS validator v5 and v6
- 1y agogtfstoolsAccepts GTFS objects from gtfsio and tidytransit ⚡
- 1y agomrbayesMVMR rjags example gated on rjags being installed
- 1y agomrbayesExamples and tests skip when rstan or rjags is missing
- 1y agomrbayespkgdown site updated
- 1y agomrbayesHelper command added for installing JAGS
- 1y agomrbayesDependency surface trimmed; maintainer handover
- 3y agogtfstoolsValidation delegated to MobilityData's canonical validator
- 4y agogtfstoolsAdds time-of-day, weekday and frequency filtering functions
- 4y agogtfstoolsEstablishes the core GTFS filtering and sf conversion family
Frequently asked questions
What is the difference between gtfstools and mrbayes?
Both compete on the same themes — r-package — within Analytics. gtfstools and mrbayes are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is gtfstools better than mrbayes?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. gtfstools and mrbayes are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to gtfstools?
Top gtfstools alternatives in Analytics are ranked by recent ship velocity. Browse the "gtfstools alternatives" section above for the current picks, or visit /alternatives/gtfstools-r for the full list with editorial commentary on each.
What are the best alternatives to mrbayes?
Top mrbayes alternatives in Analytics are ranked by recent ship velocity. Browse the "mrbayes alternatives" section above for the current picks, or visit /alternatives/mrbayes for the full list with editorial commentary on each.