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Comparison · Analytics
grex vs spmodel
A side-by-side editorial comparison of grex and spmodel — release velocity, themes, recent moves, and the top alternatives to consider.
grex vs spmodel: at a glance
What is grex?
grex is a lookup table with a version number — it ships when the annotation moves.
grex converts the deprecated Ensembl gene IDs found in GTEx data into current gene symbols and identifiers, using org.Hs.eg.db as its reference. Its value is entirely in that bundled reference data, so a release either refreshes the mapping or does nothing to it. The 2025 release does nothing to it: GitHub Actions for the docs site, a check-note fix, and a smaller vignette.
What is spmodel?
Spatial regression in R, adding block kriging and then tuning the numerics underneath it
spmodel fits spatial linear and generalised linear models, for both point-referenced and areal data, with prediction and diagnostics attached. Block prediction arrived in 0.11.0 and the releases since have refined it. The most recent release changes optimiser behaviour: the default Nelder-Mead relative stopping tolerance tightens from 1e-4 to 1e-6 to reduce convergence on local rather than global maxima.
grex vs spmodel: editorial side-by-side
grex
0.0ANALYTICS
grex is a lookup table with a version number — it ships when the annotation moves.
◆ Current state
grex converts the deprecated Ensembl gene IDs found in GTEx data into current gene symbols and identifiers, using org.Hs.eg.db as its reference. Its value is entirely in that bundled reference data, so a release either refreshes the mapping or does nothing to it. The 2025 release does nothing to it: GitHub Actions for the docs site, a check-note fix, and a smaller vignette.
◆ Where it's heading
The annotation refreshes stopped. Between 2017 and 2019 the package tracked org.Hs.eg.db through four versions and added the GTEx V7 identifier set; since then the reference has stood still while the releases turned to packaging. That gap matters more here than it would elsewhere — a stale mapping table silently returns outdated symbols rather than failing, so the package's core asset ages invisibly.
◆ Prediction
Nothing in these entries signals a planned data refresh, and the six-year pattern suggests the next release will again be infrastructure. Users needing current annotations should check which org.Hs.eg.db version is bundled rather than assume the version number reflects it.
spmodel
0.0ANALYTICS
Spatial regression in R, adding block kriging and then tuning the numerics underneath it
◆ Current state
spmodel fits spatial linear and generalised linear models, for both point-referenced and areal data, with prediction and diagnostics attached. Block prediction arrived in 0.11.0 and the releases since have refined it. The most recent release changes optimiser behaviour: the default Nelder-Mead relative stopping tolerance tightens from 1e-4 to 1e-6 to reduce convergence on local rather than global maxima.
◆ Where it's heading
Two threads run in parallel. The first is expanding what can be predicted — point predictions, then areal averages over a region via block kriging, then better accuracy and efficiency for that path as the block size default moved from 1000 to 4000 in 0.12.0. The second is numerical trustworthiness, and it is unusually prominent here: a range-constraint option for stability in 0.9.0, a corrected log determinant of the fixed effects in the restricted log likelihood in 0.11.0, a cloud semivariogram that had been doubling the semivariance fixed in 0.11.1, and now a tighter optimiser tolerance. Several of these silently changed results before they were caught.
◆ Prediction
Expect the maintainers to keep publishing explicit reproduction instructions alongside numerical default changes, as 0.13.0 does by documenting the `control = list(reltol = 1e-4)` escape hatch. The entries give no signal of expansion beyond the current model families.
Alternatives to grex and spmodel
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either grex or spmodel.
geodist
geodist stays dependency-free and fast, and warns you when 'cheap' distances stop being honest.
errors
errors keeps making uncertainty print the way each scientific field expects.
CMAQ
CMAQ went global in v5.5, and has been patching that surface ever since.
enpls
enpls has not changed its statistics since 2016 — only its website, twice.
protr
protr's feature set is finished; the work now is surviving Bioconductor's churn.
See all grex alternatives → · See all spmodel alternatives →
Recent activity from grex and spmodel
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 2mo agospmodelTighter optimiser tolerance to avoid local maxima
- 6mo agospmodelEmpirical autocovariance function and better block kriging accuracy
- 9mo agospmodelCloud semivariogram doubling fixed; geometry warnings added
- 1y agogrexgrex 1.9.1: pkgdown on Actions, smaller vignette
- 1y agospmodelBlock kriging for areal averages and their uncertainty ⚡
- 1y agospmodelRobust semivariogram and new covariance types for areal models
- 1y agospmodelRange constraint option and redefined covariance type names
- 7y agogrexgrex 1.9 refreshes the reference to org.Hs.eg.db 3.8.2
- 8y agogrexgrex 1.8 adds GTEx V7 IDs, updates to org.Hs.eg.db 3.6.0
- 8y agogrexgrex 1.7 updates the reference to org.Hs.eg.db 3.4.2
- 8y agogrexgrex 1.6 drops Google Fonts from vignettes
- 9y agogrexgrex 1.5 adds a pkgdown site and refreshes the reference
Frequently asked questions
What is the difference between grex and spmodel?
They serve adjacent needs but don't currently overlap on shipped themes. grex and spmodel are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is grex better than spmodel?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. grex and spmodel are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to grex?
Top grex alternatives in Analytics are ranked by recent ship velocity. Browse the "grex alternatives" section above for the current picks, or visit /alternatives/grex-r for the full list with editorial commentary on each.
What are the best alternatives to spmodel?
Top spmodel alternatives in Analytics are ranked by recent ship velocity. Browse the "spmodel alternatives" section above for the current picks, or visit /alternatives/spmodel for the full list with editorial commentary on each.