tern.rbmi
Reference-based multiple imputation tables, shipping only what CRAN checks demand.
Comparison · Analytics
paleobuddy vs spmodel
A side-by-side editorial comparison of paleobuddy and spmodel — release velocity, themes, recent moves, and the top alternatives to consider.
paleobuddy vs spmodel: at a glance
What is paleobuddy?
paleobuddy can now simulate trait-dependent diversification, not just birth-death.
paleobuddy simulates diversification, fossil records and phylogenetic trees, with rates that can be arbitrary functions of time — its founding idea, implemented through rexp.var() generalizing exponential and Weibull draws. The 1.1.0 release adds state-dependent speciation and extinction simulation at roughly MuHiSSE generality, and lets simulations stop at a target number of extant species instead of conditioning on time.
What is spmodel?
Spatial regression in R, adding block kriging and then tuning the numerics underneath it
spmodel fits spatial linear and generalised linear models, for both point-referenced and areal data, with prediction and diagnostics attached. Block prediction arrived in 0.11.0 and the releases since have refined it. The most recent release changes optimiser behaviour: the default Nelder-Mead relative stopping tolerance tightens from 1e-4 to 1e-6 to reduce convergence on local rather than global maxima.
paleobuddy vs spmodel: editorial side-by-side
paleobuddy
0.0ANALYTICS
paleobuddy can now simulate trait-dependent diversification, not just birth-death.
◆ Current state
paleobuddy simulates diversification, fossil records and phylogenetic trees, with rates that can be arbitrary functions of time — its founding idea, implemented through rexp.var() generalizing exponential and Weibull draws. The 1.1.0 release adds state-dependent speciation and extinction simulation at roughly MuHiSSE generality, and lets simulations stop at a target number of extant species instead of conditioning on time.
◆ Where it's heading
Releases track the maintainer's publications rather than a product cadence — 1.0.0 accompanied the MEE manuscript, 1.0.0.1 exists purely as a Zenodo citation anchor, and 1.1.0 is stated as going with a paper on SSE model accuracy for trees including fossil data. That framing sets the direction: the package grows whichever capability the next study needs to test. The stated SSE limits, no quantitative traits and no cladogenetic transitions, mark exactly where that boundary currently sits.
◆ Prediction
Quantitative traits and cladogenetic transitions are named as missing, which makes them the obvious next targets, though on this history the timing will follow a paper rather than a roadmap.
spmodel
0.0ANALYTICS
Spatial regression in R, adding block kriging and then tuning the numerics underneath it
◆ Current state
spmodel fits spatial linear and generalised linear models, for both point-referenced and areal data, with prediction and diagnostics attached. Block prediction arrived in 0.11.0 and the releases since have refined it. The most recent release changes optimiser behaviour: the default Nelder-Mead relative stopping tolerance tightens from 1e-4 to 1e-6 to reduce convergence on local rather than global maxima.
◆ Where it's heading
Two threads run in parallel. The first is expanding what can be predicted — point predictions, then areal averages over a region via block kriging, then better accuracy and efficiency for that path as the block size default moved from 1000 to 4000 in 0.12.0. The second is numerical trustworthiness, and it is unusually prominent here: a range-constraint option for stability in 0.9.0, a corrected log determinant of the fixed effects in the restricted log likelihood in 0.11.0, a cloud semivariogram that had been doubling the semivariance fixed in 0.11.1, and now a tighter optimiser tolerance. Several of these silently changed results before they were caught.
◆ Prediction
Expect the maintainers to keep publishing explicit reproduction instructions alongside numerical default changes, as 0.13.0 does by documenting the `control = list(reltol = 1e-4)` escape hatch. The entries give no signal of expansion beyond the current model families.
Alternatives to paleobuddy and spmodel
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either paleobuddy or spmodel.
tern.mmrm
An MMRM tabulation package that has published nothing since its 2024 CRAN releases.
ggmagnify
A single-purpose ggplot2 inset tool, refining the same three arguments.
symengine
An R symbolic-maths binding whose changelog is really the C++ core's release notes.
gtfstools
gtfstools stopped guarding its own object model and started accepting everyone else's.
quantities
The glue package that makes R carry units and uncertainty through the same calculation.
See all paleobuddy alternatives → · See all spmodel alternatives →
Recent activity from paleobuddy and spmodel
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 2mo agospmodelTighter optimiser tolerance to avoid local maxima
- 6mo agospmodelEmpirical autocovariance function and better block kriging accuracy
- 9mo agospmodelCloud semivariogram doubling fixed; geometry warnings added
- 1y agospmodelBlock kriging for areal averages and their uncertainty ⚡
- 1y agopaleobuddypaleobuddy 1.1.0 adds SSE trait-dependent simulation ⚡
- 1y agospmodelRobust semivariogram and new covariance types for areal models
- 1y agospmodelRange constraint option and redefined covariance type names
- 3y agopaleobuddypaleobuddy 1.0.0.1: Zenodo citation release
- 4y agopaleobuddypaleobuddy 1.0.0: first release with time-varying rates
Frequently asked questions
What is the difference between paleobuddy and spmodel?
They serve adjacent needs but don't currently overlap on shipped themes. paleobuddy and spmodel are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is paleobuddy better than spmodel?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. paleobuddy and spmodel are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to paleobuddy?
Top paleobuddy alternatives in Analytics are ranked by recent ship velocity. Browse the "paleobuddy alternatives" section above for the current picks, or visit /alternatives/paleobuddy for the full list with editorial commentary on each.
What are the best alternatives to spmodel?
Top spmodel alternatives in Analytics are ranked by recent ship velocity. Browse the "spmodel alternatives" section above for the current picks, or visit /alternatives/spmodel for the full list with editorial commentary on each.