pr2database
The protist reference database keeps widening past the rRNA gene it was built on.
Comparison · Infra & APIs
goat vs smam
A side-by-side editorial comparison of goat and smam — release velocity, themes, recent moves, and the top alternatives to consider.
Shared themes:maintenance
goat vs smam: at a glance
What is goat?
A gene-set enrichment package that outgrew its human-only origins, then went quiet.
GOAT is a CRAN-published R package for gene set enrichment testing, now at 1.1.4. The visible arc runs from a 2024 beta through a first public CRAN release to a 1.1 line that broadened the package past human gene sets and added persistence for completed analyses. Recent releases are small: the newest ships an igraph handle on plot_network() plus bug fixes.
What is smam?
Animal-movement models in R, where new stochastic processes arrive years apart.
smam fits statistical models of animal movement, covering moving-resting processes with and without measurement error, moving-resting-handling, and moving-moving processes, with simulation, point estimation and variance estimation for each. The last three releases are pure upkeep: guarding Rf_error calls after an Rcpp update, a maintainer email change, and a compiler warning fix. The substantive work in this window is 0.7.0, which added estimate and vcov generics across all fit functions, and 0.6.0, which added the moving-moving process.
goat vs smam: editorial side-by-side
goat
0.0INFRA · APIS
A gene-set enrichment package that outgrew its human-only origins, then went quiet.
◆ Current state
GOAT is a CRAN-published R package for gene set enrichment testing, now at 1.1.4. The visible arc runs from a 2024 beta through a first public CRAN release to a 1.1 line that broadened the package past human gene sets and added persistence for completed analyses. Recent releases are small: the newest ships an igraph handle on plot_network() plus bug fixes.
◆ Where it's heading
The substantive expansion happened in the 1.1 cycle; everything since has been maintenance and plotting ergonomics. Each release since 1.1 touches one function and returns something callers previously had to reconstruct, which reads as a package settling into a stable API and responding to individual user requests rather than pursuing new scope. The 13-month gap between 1.1.2 and 1.1.4 puts it firmly in low-cadence maintenance.
◆ Prediction
Expect continued point releases that expose internals from the plotting functions or refresh the bundled GO release, not new analysis capability. The entries give no signal of a planned 1.2.
smam
0.0INFRA · APIS
Animal-movement models in R, where new stochastic processes arrive years apart.
◆ Current state
smam fits statistical models of animal movement, covering moving-resting processes with and without measurement error, moving-resting-handling, and moving-moving processes, with simulation, point estimation and variance estimation for each. The last three releases are pure upkeep: guarding Rf_error calls after an Rcpp update, a maintainer email change, and a compiler warning fix. The substantive work in this window is 0.7.0, which added estimate and vcov generics across all fit functions, and 0.6.0, which added the moving-moving process.
◆ Where it's heading
This package grows by adding process models, and it does so rarely. Between the moving-moving process in 2021 and now, the only interface-level change has been the 0.7.0 generics that gave every fit function a common way to retrieve estimates and their covariance, which is consolidation of an accumulated collection rather than expansion of it. The three releases since are entirely reactive to toolchain and CRAN pressure, and they arrive in step with the maintainer's other package coga, which received the same Rcpp guard within twenty minutes on the same day.
◆ Prediction
Expect further releases to be CRAN and Rcpp maintenance unless a new movement process is published, which is what has historically prompted a minor version here. The generics added in 0.7.0 give any future process model a ready-made interface to slot into.
Alternatives to goat and smam
Other Infra & APIs products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either goat or smam.
ggalign
Composable aligned layouts, rebuilt on S7 while ggplot2 4.0 lands underneath.
prioritizr
Conservation planning absorbs the literature's target-setting rules as code.
jSDM
Joint species distribution models in Gibbs-sampled C++, quiet since 2023.
rsofun
An ecosystem model starts tracking carbon isotopes and land-use change.
usmap
Ten years in, US mapping splits its data out and finally adds Puerto Rico.
Recent activity from goat and smam
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 5mo agosmamRcpp attributes regenerated to guard Rf_error calls
- 6mo agogoatplot_network() now hands back the igraph object
- 1y agogoatFix for a reduce_genesets() infinite loop
- 1y agogoatGene sets beyond human, and analyses you can reload ⚡
- 2y agogoatFirst public release, now on CRAN ⚡
- 2y agogoatplot_lollipop() gains barplots and an effect-size axis
- 2y agogoatBeta 0.9.5 tagged, with no changes described
- 2y agosmamMaintainer email updated
- 2y agosmamCompiler format-security warning resolved
- 3y agosmamestimate and vcov generics unify all fit functions
- 5y agosmamMoving-moving process added with simulation and estimation ⚡
- 5y agosmamVariance estimators adjusted; example dataset added
Frequently asked questions
What is the difference between goat and smam?
Both compete on the same themes — maintenance — within Infra & APIs. goat and smam are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is goat better than smam?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. goat and smam are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Infra & APIs products to evaluate alongside.
What are the best alternatives to goat?
Top goat alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "goat alternatives" section above for the current picks, or visit /alternatives/goat for the full list with editorial commentary on each.
What are the best alternatives to smam?
Top smam alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "smam alternatives" section above for the current picks, or visit /alternatives/smam for the full list with editorial commentary on each.