ggpointless
ggpointless keeps adding the ggplot2 layers nobody else bothered to write.
Comparison · Infra & APIs
glcdp vs PEIMAN2
A side-by-side editorial comparison of glcdp and PEIMAN2 — release velocity, themes, recent moves, and the top alternatives to consider.
Shared themes:r-packages
glcdp vs PEIMAN2: at a glance
What is glcdp?
glcdp reaches 1.0.0 with a stable schema contract behind its data explorer.
glcdp imports light-logger data packages published to the GLC standard, driven by declared schemas rather than format-specific readers. 0.9.3 added glc_explore(), a Shiny application for browsing the registry and exporting an annotated reproducible script. 1.0.0 promotes schema 3.0.2 to the default and primary stable import contract and makes schema-declared variable types and factor-level order drive the import itself.
What is PEIMAN2?
PEIMAN2 cut its annotation database loose from its release cycle without breaking CRAN.
PEIMAN2 does enrichment analysis over post-translational modifications, testing whether a protein list is enriched for particular PTMs against UniProt-derived annotations, with translation functions bridging to mass spectrometry workflows. Its answers are only as current as its bundled database, and until June that database could only be refreshed by releasing a new package version. Version 1.1.0 changes that.
glcdp vs PEIMAN2: editorial side-by-side
glcdp
6.3INFRA · APIS
glcdp reaches 1.0.0 with a stable schema contract behind its data explorer.
◆ Current state
glcdp imports light-logger data packages published to the GLC standard, driven by declared schemas rather than format-specific readers. 0.9.3 added glc_explore(), a Shiny application for browsing the registry and exporting an annotated reproducible script. 1.0.0 promotes schema 3.0.2 to the default and primary stable import contract and makes schema-declared variable types and factor-level order drive the import itself.
◆ Where it's heading
The package is serving two audiences from one model. Programmatic users get glc_collect(), extract_metadata() and add_metadata(), with imports that reject file groups whose factor labels or level order disagree. Interactive users get an Explorer that filters by device, wearing position, modality, role and data state, pages large inventories at 100 rows, and caches remote metadata for immutable revisions. Schemas 1.0.0 and 2.0.0 stay reachable as barebones legacy paths.
◆ Prediction
With 3.0.2 named the primary stable contract and the older schemas explicitly labelled legacy, retiring the barebones paths is the most likely next structural move. The notes give no indication of work beyond the current schema line.
PEIMAN2
0.0INFRA · APIS
PEIMAN2 cut its annotation database loose from its release cycle without breaking CRAN.
◆ Current state
PEIMAN2 does enrichment analysis over post-translational modifications, testing whether a protein list is enriched for particular PTMs against UniProt-derived annotations, with translation functions bridging to mass spectrometry workflows. Its answers are only as current as its bundled database, and until June that database could only be refreshed by releasing a new package version. Version 1.1.0 changes that.
◆ Where it's heading
The package has been moving from a fixed snapshot toward versioned, user-selectable data. Earlier releases updated the bundled database in place — 1.0.0 shipped the March 2025 version and said little else — which meant the annotation vintage was whatever the package version implied. Now update_peiman_database() downloads and caches external database files and UniProt PTM lists, enrichment workflows take a database_version argument, and the mass-spec translators take a ptmlist_version, so an analysis can pin a dated database rather than a package release. The CRAN-safe default is preserved deliberately: loading, examples and checks still use the bundled internal data and need no network.
◆ Prediction
Version pinning is now expressible but the release notes do not describe how a chosen version is recorded in output, so surfacing the active database version in results is the natural companion. The database and the UniProt PTM list are versioned separately, which leaves room for a combined manifest.
Alternatives to glcdp and PEIMAN2
Other Infra & APIs products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either glcdp or PEIMAN2.
mpactr
mpactr spent two spring releases normalizing case in metadata after users kept tripping on it.
surveytidy
surveytidy taught every dplyr verb to operate on a whole collection of surveys at once.
surveycore
surveycore declared its API stable with every survey design type covered.
prospectr
prospectr spent its biggest release in years fixing spectra it had been quietly mangling.
standardlastprofile
A German electricity load-profile package added gas and doubled the market it serves.
See all glcdp alternatives → · See all PEIMAN2 alternatives →
Recent activity from glcdp and PEIMAN2
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 13d agoglcdpSchema 3.0.2 becomes the default import contract
- 29d agoglcdpglc_explore() adds a Shiny browser and metadata joins ⚡
- 1mo agoglcdpLogo and favicon refresh
- 2mo agoPEIMAN2Database updates decouple from package releases ⚡
- 1y agoPEIMAN2Bundled database refreshed to the March 2025 UniProt vintage
- 1y agoPEIMAN2Documentation fix for the second example dataset
- 2y agoPEIMAN2Background lists for SEA and PSEA; tidyverse dependency dropped
Frequently asked questions
What is the difference between glcdp and PEIMAN2?
Both compete on the same themes — r-packages — within Infra & APIs. glcdp is currently shipping more aggressively (velocity 6.3 vs 0.0), with 1 editorial sparks in the last 30 days against 0. See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is glcdp better than PEIMAN2?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. glcdp is currently shipping more aggressively (velocity 6.3 vs 0.0), with 1 editorial sparks in the last 30 days against 0. For your specific use case, the alternatives sections above list other Infra & APIs products to evaluate alongside.
What are the best alternatives to glcdp?
Top glcdp alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "glcdp alternatives" section above for the current picks, or visit /alternatives/glcdp for the full list with editorial commentary on each.
What are the best alternatives to PEIMAN2?
Top PEIMAN2 alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "PEIMAN2 alternatives" section above for the current picks, or visit /alternatives/peiman2 for the full list with editorial commentary on each.