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Comparison · Infra & APIs

ggpointless vs PEIMAN2

A side-by-side editorial comparison of ggpointless and PEIMAN2 — release velocity, themes, recent moves, and the top alternatives to consider.

Shared themes:r-packages

ggpointless vs PEIMAN2: at a glance

FeatureggpointlessPEIMAN2
SectorInfra & APIsInfra & APIs
Velocity score0.00.0
Sparks · 30d00
Top themesggplot2-extensions, data-visualization, pictogram-charts, alpha-gradientsproteomics, post-translational-modification, enrichment-analysis, reproducibility
Last editorial update1h ago1h ago
WebsiteVisit →Visit →

What is ggpointless?

ggpointless keeps adding the ggplot2 layers nobody else bothered to write.

ggpointless is a small ggplot2 extension collecting geoms that sit outside the standard set — Lexis diagrams, Chaikin-smoothed paths, hanging chains, Fourier reconstructions — and it has grown steadily rather than changed shape. The May release is the largest yet: isotype and pictogram bar charts as stacks of discrete unit cells, a family of geoms that fade paths, segments, curves and reference lines along their length, and geom_gridline(), which draws grid lines as a layer on top of the data rather than beneath it.

Read the full ggpointless trajectory →

What is PEIMAN2?

PEIMAN2 cut its annotation database loose from its release cycle without breaking CRAN.

PEIMAN2 does enrichment analysis over post-translational modifications, testing whether a protein list is enriched for particular PTMs against UniProt-derived annotations, with translation functions bridging to mass spectrometry workflows. Its answers are only as current as its bundled database, and until June that database could only be refreshed by releasing a new package version. Version 1.1.0 changes that.

Read the full PEIMAN2 trajectory →

ggpointless vs PEIMAN2: editorial side-by-side

G
ggpointless
INFRA · APIS
0.0

ggpointless keeps adding the ggplot2 layers nobody else bothered to write.

◆ Current state

ggpointless is a small ggplot2 extension collecting geoms that sit outside the standard set — Lexis diagrams, Chaikin-smoothed paths, hanging chains, Fourier reconstructions — and it has grown steadily rather than changed shape. The May release is the largest yet: isotype and pictogram bar charts as stacks of discrete unit cells, a family of geoms that fade paths, segments, curves and reference lines along their length, and geom_gridline(), which draws grid lines as a layer on top of the data rather than beneath it.

◆ Where it's heading

Two patterns are visible. Ideas get generalized rather than left as one-offs: geom_area_fade() in the previous release established alpha gradients via grid::linearGradient(), and the recent release spreads that treatment across paths, lines, steps, segments, curves and the three reference-line geoms, each with the same fade_direction and alpha_fade_to arguments. And each new geom is expected to survive real plots — the unit charts work under coord_equal, coord_polar, coord_radial, coord_flip and faceting, and geom_gridline reads positions from trained scales and inherits styling from the theme's panel grid. The package also tracks ggplot2 closely, requiring 4.0.0 and using make_constructor() and gg_par() internally, and it dropped its bundled datasets outright rather than maintain stale copies.

◆ Prediction

The fade treatment now covers most path-like geoms but not the area and ribbon family beyond geom_area_fade(), which is where the pattern has room left to run. The unit-cell charts arrive with a label helper and no fill or grouping variants, so those are the plausible next additions.

P
PEIMAN2
INFRA · APIS
0.0

PEIMAN2 cut its annotation database loose from its release cycle without breaking CRAN.

◆ Current state

PEIMAN2 does enrichment analysis over post-translational modifications, testing whether a protein list is enriched for particular PTMs against UniProt-derived annotations, with translation functions bridging to mass spectrometry workflows. Its answers are only as current as its bundled database, and until June that database could only be refreshed by releasing a new package version. Version 1.1.0 changes that.

◆ Where it's heading

The package has been moving from a fixed snapshot toward versioned, user-selectable data. Earlier releases updated the bundled database in place — 1.0.0 shipped the March 2025 version and said little else — which meant the annotation vintage was whatever the package version implied. Now update_peiman_database() downloads and caches external database files and UniProt PTM lists, enrichment workflows take a database_version argument, and the mass-spec translators take a ptmlist_version, so an analysis can pin a dated database rather than a package release. The CRAN-safe default is preserved deliberately: loading, examples and checks still use the bundled internal data and need no network.

◆ Prediction

Version pinning is now expressible but the release notes do not describe how a chosen version is recorded in output, so surfacing the active database version in results is the natural companion. The database and the UniProt PTM list are versioned separately, which leaves room for a combined manifest.

Alternatives to ggpointless and PEIMAN2

Other Infra & APIs products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either ggpointless or PEIMAN2.

See all ggpointless alternatives → · See all PEIMAN2 alternatives →

Recent activity from ggpointless and PEIMAN2

Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.

  1. 2mo agoPEIMAN2Database updates decouple from package releases
  2. 3mo agoggpointlessPictogram unit charts, gridline layers and a family of fading geoms
  3. 5mo agoggpointlessFourier and arch geoms, area fades and glowing points
  4. 1y agoPEIMAN2Bundled database refreshed to the March 2025 UniProt vintage
  5. 1y agoPEIMAN2Documentation fix for the second example dataset
  6. 2y agoggpointlessgeom_catenary() draws a hanging chain
  7. 2y agoPEIMAN2Background lists for SEA and PSEA; tidyverse dependency dropped
  8. 3y agoggpointlessgeom_chaikin() adds corner-cutting path smoothing
  9. 4y agoggpointlessgeom_lexis() and the female_leaders dataset

Frequently asked questions

What is the difference between ggpointless and PEIMAN2?

Both compete on the same themes — r-packages — within Infra & APIs. ggpointless and PEIMAN2 are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.

Is ggpointless better than PEIMAN2?

Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. ggpointless and PEIMAN2 are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Infra & APIs products to evaluate alongside.

What are the best alternatives to ggpointless?

Top ggpointless alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "ggpointless alternatives" section above for the current picks, or visit /alternatives/ggpointless for the full list with editorial commentary on each.

What are the best alternatives to PEIMAN2?

Top PEIMAN2 alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "PEIMAN2 alternatives" section above for the current picks, or visit /alternatives/peiman2 for the full list with editorial commentary on each.