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Comparison · Infra & APIs
PEIMAN2 vs samplr
A side-by-side editorial comparison of PEIMAN2 and samplr — release velocity, themes, recent moves, and the top alternatives to consider.
PEIMAN2 vs samplr: at a glance
What is PEIMAN2?
PEIMAN2 cut its annotation database loose from its release cycle without breaking CRAN.
PEIMAN2 does enrichment analysis over post-translational modifications, testing whether a protein list is enriched for particular PTMs against UniProt-derived annotations, with translation functions bridging to mass spectrometry workflows. Its answers are only as current as its bundled database, and until June that database could only be refreshed by releasing a new package version. Version 1.1.0 changes that.
What is samplr?
A cognitive-science sampling package ships once, then goes quiet for eighteen months
samplr compares human performance against sampling algorithms, giving cognitive scientists the MCMC machinery to test whether people behave like samplers. Its entire public history is three releases: a 1.0.0 in August 2024, a floating-point fix eighteen seconds later, and then nothing until a February 2026 patch. The release notes are unusually thin even by CRAN standards.
PEIMAN2 vs samplr: editorial side-by-side
PEIMAN2
0.0INFRA · APIS
PEIMAN2 cut its annotation database loose from its release cycle without breaking CRAN.
◆ Current state
PEIMAN2 does enrichment analysis over post-translational modifications, testing whether a protein list is enriched for particular PTMs against UniProt-derived annotations, with translation functions bridging to mass spectrometry workflows. Its answers are only as current as its bundled database, and until June that database could only be refreshed by releasing a new package version. Version 1.1.0 changes that.
◆ Where it's heading
The package has been moving from a fixed snapshot toward versioned, user-selectable data. Earlier releases updated the bundled database in place — 1.0.0 shipped the March 2025 version and said little else — which meant the annotation vintage was whatever the package version implied. Now update_peiman_database() downloads and caches external database files and UniProt PTM lists, enrichment workflows take a database_version argument, and the mass-spec translators take a ptmlist_version, so an analysis can pin a dated database rather than a package release. The CRAN-safe default is preserved deliberately: loading, examples and checks still use the bundled internal data and need no network.
◆ Prediction
Version pinning is now expressible but the release notes do not describe how a chosen version is recorded in output, so surfacing the active database version in results is the natural companion. The database and the UniProt PTM list are versioned separately, which leaves room for a combined manifest.
samplr
0.0INFRA · APIS
A cognitive-science sampling package ships once, then goes quiet for eighteen months
◆ Current state
samplr compares human performance against sampling algorithms, giving cognitive scientists the MCMC machinery to test whether people behave like samplers. Its entire public history is three releases: a 1.0.0 in August 2024, a floating-point fix eighteen seconds later, and then nothing until a February 2026 patch. The release notes are unusually thin even by CRAN standards.
◆ Where it's heading
The feed shows a package that shipped and stopped. The 2024 tags were both created in one sitting and say almost nothing; the 2026 release is a row-count bug in Mean_Variance() bundled with citation metadata, a dropped dependency and http-to-https link fixes — the housekeeping profile of a package being kept alive for the paper that cites it rather than actively developed.
◆ Prediction
Adding citation information to the README is usually the move of a maintainer expecting the package to be referenced rather than extended. On this cadence the next release is more likely another CRAN-hygiene patch than new algorithms; there is not enough in these notes to say otherwise.
Alternatives to PEIMAN2 and samplr
Other Infra & APIs products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either PEIMAN2 or samplr.
massProps
A mass-properties rollup spends a year on documentation and follows its sibling's API
writeAlizer
Six months of releases and not one of them touched the scoring models
stochvol
A Bayesian volatility sampler in its maintenance decade, paying for its own speed
midr
A black-box interpreter reaches CRAN, then learns multi-class and survival responses
GeoThinneR
Spatial thinning grows a result object, and the API breaks to make room for it
See all PEIMAN2 alternatives → · See all samplr alternatives →
Recent activity from PEIMAN2 and samplr
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 2mo agoPEIMAN2Database updates decouple from package releases ⚡
- 5mo agosamplrMean_Variance() row count corrected after eighteen months
- 1y agoPEIMAN2Bundled database refreshed to the March 2025 UniProt vintage
- 1y agoPEIMAN2Documentation fix for the second example dataset
- 1y agosamplrFloating point comparison fix
- 1y agosamplrsamplr 1.0.0
- 2y agoPEIMAN2Background lists for SEA and PSEA; tidyverse dependency dropped
Frequently asked questions
What is the difference between PEIMAN2 and samplr?
They serve adjacent needs but don't currently overlap on shipped themes. PEIMAN2 and samplr are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is PEIMAN2 better than samplr?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. PEIMAN2 and samplr are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Infra & APIs products to evaluate alongside.
What are the best alternatives to PEIMAN2?
Top PEIMAN2 alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "PEIMAN2 alternatives" section above for the current picks, or visit /alternatives/peiman2 for the full list with editorial commentary on each.
What are the best alternatives to samplr?
Top samplr alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "samplr alternatives" section above for the current picks, or visit /alternatives/samplr for the full list with editorial commentary on each.