EvoPhylo
EvoPhylo added BEAST2 alongside MrBayes, then went quiet for two years.
Comparison · Analytics
etn vs qtl
A side-by-side editorial comparison of etn and qtl — release velocity, themes, recent moves, and the top alternatives to consider.
etn vs qtl: at a glance
What is etn?
etn stopped being an RStudio-server package and became something you can run anywhere.
etn is the R client for the European Tracking Network's acoustic telemetry database, maintained at INBO. The 3.0.0 release routes queries through an API served by the companion etnservice package, so the package no longer requires a session on the ETN RStudio server. Credentials moved out of a connection object and into .Renviron, and the data model was rescoped in 2.0.0 around tag_serial_number so acoustic work is one scope among several rather than the whole package.
What is qtl?
R/qtl is in pure custodial mode: every recent release answers a compiler, not a user
R/qtl is the long-established R package for QTL mapping in experimental crosses, covering interval mapping, composite interval mapping, multiple-QTL model fitting and the associated cross data formats. Nothing in the recent release history adds capability. Version 1.74 removes an include that started warning on CRAN, 1.72 improves an error message in cim(), and 1.70 migrates the C code from Calloc/Realloc/Free to their R_-prefixed equivalents for R-devel.
etn vs qtl: editorial side-by-side
etn
0.0ANALYTICS
etn stopped being an RStudio-server package and became something you can run anywhere.
◆ Current state
etn is the R client for the European Tracking Network's acoustic telemetry database, maintained at INBO. The 3.0.0 release routes queries through an API served by the companion etnservice package, so the package no longer requires a session on the ETN RStudio server. Credentials moved out of a connection object and into .Renviron, and the data model was rescoped in 2.0.0 around tag_serial_number so acoustic work is one scope among several rather than the whole package.
◆ Where it's heading
Two arcs run in parallel: widening access, and making room for non-acoustic data. The access work has been deliberate — an API-backed beta in 2024, then a stable release that picks the transport automatically and checks that a local etnservice install matches the deployed one, because the same query returning different results by transport would be worse than requiring the server. The Darwin Core export added in 2.1.0 points the same outward direction, moving data to OBIS and GBIF instead of keeping it in the ETN silo.
◆ Prediction
The cpod scope named in the 2.0.0 notes is the most likely next addition, now that the naming and the API transport are both in place to carry it.
qtl
0.0ANALYTICS
R/qtl is in pure custodial mode: every recent release answers a compiler, not a user
◆ Current state
R/qtl is the long-established R package for QTL mapping in experimental crosses, covering interval mapping, composite interval mapping, multiple-QTL model fitting and the associated cross data formats. Nothing in the recent release history adds capability. Version 1.74 removes an include that started warning on CRAN, 1.72 improves an error message in cim(), and 1.70 migrates the C code from Calloc/Realloc/Free to their R_-prefixed equivalents for R-devel.
◆ Where it's heading
The package is being maintained, not developed. The work divides cleanly into keeping the compiled code building against successive R and toolchain versions, and fixing narrow bugs reported through the issue tracker. The C-level migrations in particular are compliance with R's tightening of its C interface rather than anything chosen. Users should read the stability as maturity: the analysis surface has been fixed for years and the maintainer is keeping it installable.
◆ Prediction
R has continued to restrict its non-API C entry points, and this package has already made two such migrations, so further compile-time compliance work is the most likely content of the next release.
Alternatives to etn and qtl
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either etn or qtl.
treespace
treespace ships once every year or two, and only when CRAN or a user forces it.
Rpath
Rpath 1.1.0 learns to read Ecopath's own files, easing migration off the desktop tool.
TAF
TAF keeps turning ICES stock assessments into reproducible, dependency-pinned projects.
parallelDist
parallelDist is in pure preservation mode — one build fix every few years.
cairo
Cairo finally catches R's graphics engine, all the way to GE API 16.
Recent activity from etn and qtl
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 5mo agoetnetn runs off the ETN RStudio server via the etnservice API ⚡
- 6mo agoetnData model rescoped; acoustic becomes one named scope
- 6mo agoetnwrite_dwc() exports telemetry as Darwin Core for OBIS and GBIF
- 6mo agoetndepth_in_meters added to acoustic detections
- 6mo agoetnwrite_dwc() fixes for uppercase project codes
- 6mo agoetnNA formatting and duplicate receiver ID fixes
- 8mo agoqtlRemove R_ext/PrtUtil.h include flagged by CRAN
- 8mo agoqtlClearer cim() error when multiple phenotypes are passed
- 1y agoqtlC memory calls migrated to R_Calloc/R_Realloc/R_Free
- 2y agoqtlFix Rprintf call and remaining compiler warnings
- 2y agoqtlFix summary.scanone() thresholds and csvs phenotype reading
- 3y agoqtlFix addint()/addcovarint() with X chromosome QTL and missing phenotypes
Frequently asked questions
What is the difference between etn and qtl?
They serve adjacent needs but don't currently overlap on shipped themes. etn and qtl are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is etn better than qtl?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. etn and qtl are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to etn?
Top etn alternatives in Analytics are ranked by recent ship velocity. Browse the "etn alternatives" section above for the current picks, or visit /alternatives/etn-r for the full list with editorial commentary on each.
What are the best alternatives to qtl?
Top qtl alternatives in Analytics are ranked by recent ship velocity. Browse the "qtl alternatives" section above for the current picks, or visit /alternatives/qtl-r for the full list with editorial commentary on each.