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Comparison · Analytics
EpiNow2 vs spatstat.geom
A side-by-side editorial comparison of EpiNow2 and spatstat.geom — release velocity, themes, recent moves, and the top alternatives to consider.
Shared themes:r-package
EpiNow2 vs spatstat.geom: at a glance
What is EpiNow2?
EpiNow2 unified its model interface, then went back to deepen the estimators behind it
EpiNow2 estimates reproduction numbers, infections and delay distributions from incomplete epidemiological reporting data. 1.8.0 was the structural turning point: every main modelling function now returns a consistent S3 object with `fit`, `args` and `observations`, reachable through shared accessors. The releases either side of it work on estimator quality — accumulation of irregularly reported data in 1.7.0, and a substantial expansion of `estimate_truncation()` in 1.9.0.
What is spatstat.geom?
The geometry layer under spatstat, steadily absorbing 3D patterns and missing-data semantics
spatstat.geom holds the spatial data structures and geometric operations the rest of the spatstat family builds on — windows, tessellations, images, point patterns and the operations that move between them. Recent releases split their attention between extending those structures to three dimensions and hardening the discretisation code where polygonal geometry meets a pixel grid. 3.8-2 adds more capabilities for three-dimensional point patterns.
EpiNow2 vs spatstat.geom: editorial side-by-side
EpiNow2
0.0ANALYTICS
EpiNow2 unified its model interface, then went back to deepen the estimators behind it
◆ Current state
EpiNow2 estimates reproduction numbers, infections and delay distributions from incomplete epidemiological reporting data. 1.8.0 was the structural turning point: every main modelling function now returns a consistent S3 object with `fit`, `args` and `observations`, reachable through shared accessors. The releases either side of it work on estimator quality — accumulation of irregularly reported data in 1.7.0, and a substantial expansion of `estimate_truncation()` in 1.9.0.
◆ Where it's heading
The package spent this window paying down interface debt and is now extending from the tidier base. Options that existed only for `estimate_infections()` have been propagated outward: `estimate_truncation()` gained the full `dist_spec` delay families, `obs_opts()` observation model selection between Poisson and negative binomial, and the `likelihood` and `return_likelihood` settings that make prior-only fits and loo-compatible output possible. Hardcoded assumptions are being replaced by specifiable ones in the same motion — the truncation model's additive noise term was a fixed `sigma ~ normal(0, 1)` prior and is now a `dist_spec` argument.
◆ Prediction
Expect the remaining modelling functions to keep converging on the shared options interface, since the last two releases have each moved another function onto it. A new `estimate_dist()` for interval-censored linelist data suggests delay estimation is the area still gaining surface.
spatstat.geom
2.5ANALYTICS
The geometry layer under spatstat, steadily absorbing 3D patterns and missing-data semantics
◆ Current state
spatstat.geom holds the spatial data structures and geometric operations the rest of the spatstat family builds on — windows, tessellations, images, point patterns and the operations that move between them. Recent releases split their attention between extending those structures to three dimensions and hardening the discretisation code where polygonal geometry meets a pixel grid. 3.8-2 adds more capabilities for three-dimensional point patterns.
◆ Where it's heading
Two threads run through this window. The first is a family-wide push into 3D that originated in the simulation package and has now reached the geometry layer. The second is a slower semantic change: 3.5-0 introduced missing or unavailable (NA) spatial objects, and 3.6-0 followed with more facilities for handling them, meaning an absent window or image became a representable value rather than an error. Around both, the plotting and discretisation code accretes steadily — nonlinear colour maps, plot backgrounds, transparency control, signed distance transforms, and repeated attention to boundary pixels.
◆ Prediction
Expect the 3D surface here to keep filling in behind the simulation package rather than leading it, given that 3.8-2 follows the 3D simulation release by two months. The entries give no indication that the NA work is finished, since it has already spanned two releases.
Alternatives to EpiNow2 and spatstat.geom
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either EpiNow2 or spatstat.geom.
kernelshap
kernelshap makes permutation SHAP practical past eight features, then fixes the kernel weights it had wrong.
filtro
filtro moves to S7 and multiplies its feature-scoring methods in a single release.
modeltime.resample
modeltime.resample exists to keep backtesting working as tidymodels shifts underneath it.
modeltime.ensemble
modeltime.ensemble wakes after four years, and the work is all tune 2.0 compatibility.
shapviz
shapviz refines its SHAP plots release by release while chasing ggplot2's moving target.
See all EpiNow2 alternatives → · See all spatstat.geom alternatives →
Recent activity from EpiNow2 and spatstat.geom
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 20d agospatstat.geomMore three-dimensional point pattern capabilities
- 1mo agoEpiNow2estimate_truncation gains full delay and observation options
- 2mo agospatstat.geomBetter boundary pixel handling when discretising windows
- 6mo agoEpiNow2Unified return objects and shared accessors across all models ⚡
- 6mo agospatstat.geomAnalytic level sets and signed distance transforms
- 10mo agospatstat.geomNA object handling extended; clickpoly gains grid snapping
- 1y agospatstat.geomNA spatial objects, hole removal and connected components
- 1y agospatstat.geomNonlinear colour and symbol maps; half-open quadrat tiles
- 1y agoEpiNow2Patch for an upstream rstan issue
- 1y agoEpiNow2Accumulation for irregularly reported data; unified priors
- 1y agoEpiNow2Matern kernel spectral density fix and GP prior revert
- 1y agoEpiNow2Gaussian Process model improvements and explicit defaults
Frequently asked questions
What is the difference between EpiNow2 and spatstat.geom?
Both compete on the same themes — r-package — within Analytics. spatstat.geom is currently shipping more aggressively (velocity 2.5 vs 0.0), with 0 editorial sparks in the last 30 days against 0. See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is EpiNow2 better than spatstat.geom?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. spatstat.geom is currently shipping more aggressively (velocity 2.5 vs 0.0), with 0 editorial sparks in the last 30 days against 0. For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to EpiNow2?
Top EpiNow2 alternatives in Analytics are ranked by recent ship velocity. Browse the "EpiNow2 alternatives" section above for the current picks, or visit /alternatives/epinow2 for the full list with editorial commentary on each.
What are the best alternatives to spatstat.geom?
Top spatstat.geom alternatives in Analytics are ranked by recent ship velocity. Browse the "spatstat.geom alternatives" section above for the current picks, or visit /alternatives/spatstat-geom for the full list with editorial commentary on each.