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epidemics vs webchem

A side-by-side editorial comparison of epidemics and webchem — release velocity, themes, recent moves, and the top alternatives to consider.

epidemics vs webchem: at a glance

Featureepidemicswebchem
SectorAnalyticsAnalytics
Velocity score3.80.0
Sparks · 30d10
Top themesepiverse-trace, compartmental-models, odin, breaking-changescheminformatics, web-apis, data-access, ropensci
Last editorial update4h ago1h ago
WebsiteVisit →Visit →

What is epidemics?

epidemics swapped its C++ engine for odin — and quietly inverted how contact matrices must be passed.

epidemics ships composable compartmental model structures — default SEIR-V, Vacamole, diphtheria and Ebola — with classes for populations, interventions and vaccination campaigns. After more than two years without a release, 0.5.0 landed in July 2026 carrying both an engine migration and a breaking input-convention change. Maintainership moved to a new lead back in 0.4.0.

Read the full epidemics trajectory →

What is webchem?

Adding chemical databases with one hand while public ones close programmatic access with the other.

webchem is the R interface to public chemical data — retrieving identifiers, properties and structures across roughly a dozen web services. Its release history reads as a running account of which of those services still allow automated access. Version 1.3.0 removed two functions outright because their sources withdrew: ChemIDplus was retired by the NLM, and PAN stopped supporting programmatic access. Version 1.3.1 continues the pattern, updating URLs that stopped working and noting that ChemSpider InChIKey validation now requires an API key like the rest of that provider's endpoints.

Read the full webchem trajectory →

epidemics vs webchem: editorial side-by-side

E
epidemics
ANALYTICS
3.8

epidemics swapped its C++ engine for odin — and quietly inverted how contact matrices must be passed.

◆ Current state

epidemics ships composable compartmental model structures — default SEIR-V, Vacamole, diphtheria and Ebola — with classes for populations, interventions and vaccination campaigns. After more than two years without a release, 0.5.0 landed in July 2026 carrying both an engine migration and a breaking input-convention change. Maintainership moved to a new lead back in 0.4.0.

◆ Where it's heading

The package's history is a sequence of deliberate breaking releases: 0.2.0 renamed every model function and vectorised the ODE models, 0.3.0 restructured the Ebola model into two levels and made replicates the default, and 0.5.0 rewrites the compiled core. The direction is toward a smaller, more declarative model definition layer with the numerical work delegated to a dedicated tool.

◆ Prediction

With the default, Vacamole and diphtheria systems now declared in odin, the Ebola model is the obvious remaining candidate for the same treatment.

W
webchem
ANALYTICS
0.0

Adding chemical databases with one hand while public ones close programmatic access with the other.

◆ Current state

webchem is the R interface to public chemical data — retrieving identifiers, properties and structures across roughly a dozen web services. Its release history reads as a running account of which of those services still allow automated access. Version 1.3.0 removed two functions outright because their sources withdrew: ChemIDplus was retired by the NLM, and PAN stopped supporting programmatic access. Version 1.3.1 continues the pattern, updating URLs that stopped working and noting that ChemSpider InChIKey validation now requires an API key like the rest of that provider's endpoints.

◆ Where it's heading

Two opposing forces run through these entries. The package keeps widening its coverage — ChEMBL in 1.2.0, LIPID MAPS and SwissLipids identifiers via Wikidata, structure images, Mol export — while the open, unauthenticated end of the chemical web keeps contracting. The other consistent thread is interface harmonisation: successive releases have converged the get_* functions on the same query and from arguments, tibble returns, and CAS reformatting, so the package feels like one interface rather than a dozen wrappers.

◆ Prediction

Expect further defunct functions and URL repairs as more providers move behind keys or shut down, alongside occasional additions of sources that remain open. The entries show no sign of a general credential-management layer, which is what a package facing this trend would eventually need.

Alternatives to epidemics and webchem

Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either epidemics or webchem.

See all epidemics alternatives → · See all webchem alternatives →

Recent activity from epidemics and webchem

Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.

  1. 25d agoepidemicsODE models migrate to odin; contact matrices must no longer be transposed
  2. 1y agowebchemRepairs broken URLs; ChemSpider check now needs a key
  3. 2y agoepidemicsPeak timing and scenario comparison helpers; negative-susceptible bug fixed
  4. 2y agoepidemicsEbola model accepts vector inputs and defaults to 100 replicates
  5. 2y agoepidemicsODE models vectorised; every model function renamed
  6. 2y agoepidemicsFirst release: four composable compartmental model structures
  7. 3y agowebchemChemIDplus and PAN queries removed as sources shut down
  8. 3y agowebchemAdds ChEMBL access for bioactive compound data
  9. 4y agowebchemcir_query() returns a tibble, a breaking change
  10. 4y agowebchemAdds Mol structure export; aw_query renamed to bcpc_query
  11. 5y agowebchemFetches LIPID MAPS and SwissLipids identifiers from Wikidata

Frequently asked questions

What is the difference between epidemics and webchem?

They serve adjacent needs but don't currently overlap on shipped themes. epidemics is currently shipping more aggressively (velocity 3.8 vs 0.0), with 1 editorial sparks in the last 30 days against 0. See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.

Is epidemics better than webchem?

Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. epidemics is currently shipping more aggressively (velocity 3.8 vs 0.0), with 1 editorial sparks in the last 30 days against 0. For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.

What are the best alternatives to epidemics?

Top epidemics alternatives in Analytics are ranked by recent ship velocity. Browse the "epidemics alternatives" section above for the current picks, or visit /alternatives/epidemics for the full list with editorial commentary on each.

What are the best alternatives to webchem?

Top webchem alternatives in Analytics are ranked by recent ship velocity. Browse the "webchem alternatives" section above for the current picks, or visit /alternatives/webchem for the full list with editorial commentary on each.