← Back to home
Comparison · Analytics

enpls vs qqman

A side-by-side editorial comparison of enpls and qqman — release velocity, themes, recent moves, and the top alternatives to consider.

enpls vs qqman: at a glance

Featureenplsqqman
SectorAnalyticsAnalytics
Velocity score0.00.0
Sparks · 30d00
Top themespartial-least-squares, ensemble-learning, chemometrics, maintenance-modegwas, genomics, manhattan-plot, visualization
Last editorial update2h ago49m ago
WebsiteVisit →Visit →

What is enpls?

enpls has not changed its statistics since 2016 — only its website, twice.

enpls implements ensemble partial least squares regression, with variants for feature selection, outlier detection and model applicability. Across the six most recent releases there is not one change to the modeling code. They cover a documentation website, a website URL change, a font stack, code indentation, a CI service, and most recently a GitHub Actions migration with an R CMD check note fix.

Read the full enpls trajectory →

What is qqman?

The Manhattan-plot package for GWAS results, finished and dormant since 2017.

qqman does two things: manhattan() and qq() plots for genome-wide association study results. Its six visible releases run from 2014 to a single 2017 packaging fix, and the last release with any user-facing change shipped in 2015. The archive is non-monotonic — a 0.0.0 tag published after 0.1.1 archives the pre-package standalone script — so version order and publication order disagree.

Read the full qqman trajectory →

enpls vs qqman: editorial side-by-side

E
enpls
ANALYTICS
0.0

enpls has not changed its statistics since 2016 — only its website, twice.

◆ Current state

enpls implements ensemble partial least squares regression, with variants for feature selection, outlier detection and model applicability. Across the six most recent releases there is not one change to the modeling code. They cover a documentation website, a website URL change, a font stack, code indentation, a CI service, and most recently a GitHub Actions migration with an R CMD check note fix.

◆ Where it's heading

The statistical work finished around version 5.6, which added cross-validation fold control and fixed component selection when the maximum was left unspecified. Everything since has kept the package installable and its docs online. The 2025 release arriving the same day as sibling package grex, with the same two fixes, confirms the pattern: these are maintainer sweeps across a portfolio, not attention to enpls specifically.

◆ Prediction

The next release will almost certainly be another CRAN or tooling fix. Six consecutive infrastructure-only releases across nine years give no basis for expecting new methods.

Q
qqman
ANALYTICS
0.0

The Manhattan-plot package for GWAS results, finished and dormant since 2017.

◆ Current state

qqman does two things: manhattan() and qq() plots for genome-wide association study results. Its six visible releases run from 2014 to a single 2017 packaging fix, and the last release with any user-facing change shipped in 2015. The archive is non-monotonic — a 0.0.0 tag published after 0.1.1 archives the pre-package standalone script — so version order and publication order disagree.

◆ Where it's heading

The real development window was 2014 to 2015. The 0.1.2 release did the substantive work, replacing the assumption that SNPs are evenly distributed across chromosomes and handing users control of axis limits, labels and log transformation; 0.1.3 then added annotation by p-value threshold and top-SNP-per-chromosome. After that the package stops. Notably, the archival 0.0.0 entry records that the original script had confidence intervals on QQ plots and richer highlighting than the released package ever regained.

◆ Prediction

With one packaging fix in the last decade, these entries support no prediction of further releases. The package reads as complete for its narrow purpose rather than abandoned mid-arc.

Alternatives to enpls and qqman

Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either enpls or qqman.

See all enpls alternatives → · See all qqman alternatives →

Recent activity from enpls and qqman

Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.

  1. 1y agoenplsenpls 6.1.1 moves pkgdown to GitHub Actions
  2. 7y agoenplsenpls 6.1 adopts tidyverse code style
  3. 8y agoenplsenpls 6.0 changes the documentation URL
  4. 8y agoenplsenpls 5.9 drops Google Fonts from vignettes
  5. 9y agoenplsenpls 5.8 updates gallery images, enables HTTPS
  6. 9y agoqqmanREADME image path fix for pandoc
  7. 9y agoenplsenpls 5.7 adds a pkgdown site and Windows CI
  8. 11y agoqqmanAnnotate SNPs by p-value threshold or per-chromosome top hit
  9. 11y agoqqmanChromosome ticks stop assuming even SNP spacing; axis control opens up
  10. 12y agoqqmanArchival tag for the pre-package standalone script
  11. 12y agoqqmanVignette touch-up
  12. 12y agoqqmanZenodo archival tag, no code change

Frequently asked questions

What is the difference between enpls and qqman?

They serve adjacent needs but don't currently overlap on shipped themes. enpls and qqman are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.

Is enpls better than qqman?

Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. enpls and qqman are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.

What are the best alternatives to enpls?

Top enpls alternatives in Analytics are ranked by recent ship velocity. Browse the "enpls alternatives" section above for the current picks, or visit /alternatives/enpls for the full list with editorial commentary on each.

What are the best alternatives to qqman?

Top qqman alternatives in Analytics are ranked by recent ship velocity. Browse the "qqman alternatives" section above for the current picks, or visit /alternatives/qqman-r for the full list with editorial commentary on each.