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Comparison · Analytics
cleanepi vs pkglite
A side-by-side editorial comparison of cleanepi and pkglite — release velocity, themes, recent moves, and the top alternatives to consider.
cleanepi vs pkglite: at a glance
What is cleanepi?
cleanepi is in the long tail of bug fixes that follows a 1.0 — and changed maintainers along the way.
cleanepi cleans and standardises epidemiological line list data — dates, subject IDs, missing values, duplicates — and produces a report of what it changed. Since 1.0.0 in mid-2024 the releases have been almost entirely corrective: date-guesser fixes, report structure fixes and matching behaviour corrections. Maintainership passed to Bubacarr Bah in 1.1.2.
What is pkglite?
pkglite's whole job is knowing which files in an R package are text — and it keeps getting better at guessing.
pkglite packs an R package into a single plain-text file and unpacks it again, the mechanism pharmaceutical submissions use to move source through systems that accept text but not archives. The API settled at 0.2.0 with file specification templates, `merge()` and `prune()`. Every release since has improved the same thing: the dictionary that decides whether a file is text or binary, most recently rebuilt from the file extensions found across 21,369 CRAN packages.
cleanepi vs pkglite: editorial side-by-side
cleanepi
0.0ANALYTICS
cleanepi is in the long tail of bug fixes that follows a 1.0 — and changed maintainers along the way.
◆ Current state
cleanepi cleans and standardises epidemiological line list data — dates, subject IDs, missing values, duplicates — and produces a report of what it changed. Since 1.0.0 in mid-2024 the releases have been almost entirely corrective: date-guesser fixes, report structure fixes and matching behaviour corrections. Maintainership passed to Bubacarr Bah in 1.1.2.
◆ Where it's heading
Work has concentrated on the report object and on making the cleaning functions behave predictably at the edges — case- and whitespace-insensitive missing-value matching, report elements returned as vectors instead of comma-separated strings, an argument to print a single operation's report. The underlying cleaning API has barely moved since 1.0.0, which suggests it is settled.
◆ Prediction
The report interface has been reworked repeatedly across these releases and is the most likely place for further change; the cleaning functions themselves look stable.
pkglite
0.0ANALYTICS
pkglite's whole job is knowing which files in an R package are text — and it keeps getting better at guessing.
◆ Current state
pkglite packs an R package into a single plain-text file and unpacks it again, the mechanism pharmaceutical submissions use to move source through systems that accept text but not archives. The API settled at 0.2.0 with file specification templates, `merge()` and `prune()`. Every release since has improved the same thing: the dictionary that decides whether a file is text or binary, most recently rebuilt from the file extensions found across 21,369 CRAN packages.
◆ Where it's heading
The failure mode this package cares about is silent — misclassify a binary file as text and the round trip corrupts it, misclassify text as binary and it bloats or drops. So the work is empirical rather than architectural: mine real packages for what extensions actually appear, then widen coverage where specific ecosystems break the pattern. Stan interfaces via rstan brought `src/Makevars` and `src/Makefile` handling; machine learning frameworks brought their own binary formats. Dependencies have gone the other way, with cli removed and replaced by internal equivalents.
◆ Prediction
Expect the next substantive release to widen file specification coverage again for whatever package family the maintainers find breaking the default discovery, since that has been the content of every non-maintenance release for four years.
Alternatives to cleanepi and pkglite
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either cleanepi or pkglite.
DoseFinding
New stewardship at openpharma, then two releases adding the methods MCP-Mod was missing
webmockr
The stubbing library added httr2 support, then spent a year cutting itself free of everything else
crul
crul took mocking back from webmockr and made it a property of the client itself
dendroNetwork
Six releases, six identical bodies — the feed carries the package abstract instead of release notes
chattr
chattr deleted every LLM integration it had written and outsourced the lot to ellmer
See all cleanepi alternatives → · See all pkglite alternatives →
Recent activity from cleanepi and pkglite
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 5mo agopkgliteMaintainer email and CI workflow updates
- 9mo agocleanepiCase-insensitive missing-value matching and report fixes
- 1y agocleanepiReport elements become vectors; date parsing default restored
- 1y agocleanepiDate guesser corrected; empty-row indices fixed
- 1y agopkgliteHandles Stan-interfacing packages and ML binary formats
- 1y agopkgliteExtension dictionary rebuilt from 21,369 CRAN packages
- 2y agocleanepiFirst major release with cleaning and reporting
- 2y agopkgliteTest helpers moved to helper.R
- 3y agopkgliteMore file types recognised; cli dependency dropped
- 5y agopkgliteFile collections gain merge, prune, and a tests template
Frequently asked questions
What is the difference between cleanepi and pkglite?
They serve adjacent needs but don't currently overlap on shipped themes. cleanepi and pkglite are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is cleanepi better than pkglite?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. cleanepi and pkglite are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to cleanepi?
Top cleanepi alternatives in Analytics are ranked by recent ship velocity. Browse the "cleanepi alternatives" section above for the current picks, or visit /alternatives/cleanepi for the full list with editorial commentary on each.
What are the best alternatives to pkglite?
Top pkglite alternatives in Analytics are ranked by recent ship velocity. Browse the "pkglite alternatives" section above for the current picks, or visit /alternatives/pkglite for the full list with editorial commentary on each.