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cheapr vs qqman

A side-by-side editorial comparison of cheapr and qqman — release velocity, themes, recent moves, and the top alternatives to consider.

cheapr vs qqman: at a glance

Featurecheaprqqman
SectorAnalyticsAnalytics
Velocity score0.00.0
Sparks · 30d00
Top themesperformance, parallelism, simd, c-apigwas, genomics, manhattan-plot, visualization
Last editorial update8h ago1h ago
WebsiteVisit →Visit →

What is cheapr?

cheapr turned multi-threaded, and its next stop is a C++20 public API.

cheapr supplies lower-overhead replacements for base R's data manipulation primitives — subsetting, recycling, concatenation, attribute handling, data frame construction. Through 2025 it grew function by function: sset_df/sset_row/sset_col, list_as_df, cheapr_c, counts, str_coalesce, df_modify. The 1.5.0 release in April 2026 changed the nature of the package, adding parallelised math functions, user-settable thread counts, multi-threaded vector initialisers, and a SIMD-parallelised if_else_, with threading on by default at two threads.

Read the full cheapr trajectory →

What is qqman?

The Manhattan-plot package for GWAS results, finished and dormant since 2017.

qqman does two things: manhattan() and qq() plots for genome-wide association study results. Its six visible releases run from 2014 to a single 2017 packaging fix, and the last release with any user-facing change shipped in 2015. The archive is non-monotonic — a 0.0.0 tag published after 0.1.1 archives the pre-package standalone script — so version order and publication order disagree.

Read the full qqman trajectory →

cheapr vs qqman: editorial side-by-side

C
cheapr
ANALYTICS
0.0

cheapr turned multi-threaded, and its next stop is a C++20 public API.

◆ Current state

cheapr supplies lower-overhead replacements for base R's data manipulation primitives — subsetting, recycling, concatenation, attribute handling, data frame construction. Through 2025 it grew function by function: sset_df/sset_row/sset_col, list_as_df, cheapr_c, counts, str_coalesce, df_modify. The 1.5.0 release in April 2026 changed the nature of the package, adding parallelised math functions, user-settable thread counts, multi-threaded vector initialisers, and a SIMD-parallelised if_else_, with threading on by default at two threads.

◆ Where it's heading

Two arcs run at once. The visible one is parallelism: what began as single-threaded C shortcuts is becoming a threaded compute layer, and the notes state the C/C++ API is mid-rewrite with a stable form promised at 2.0.0 behind a C++20 requirement. The quieter one is R C API compliance — 1.5.1 removed R_MissingArg, R_UnboundValue, Rf_findVar and Rf_findVarinFrame, the non-API entry points being closed off upstream. The 1.5.x patches since are narrow crash fixes, which reads as consolidation before the 2.0.0 break.

◆ Prediction

Expect 2.0.0 to land the stable C/C++ API behind a C++20 toolchain floor, with more of the existing function surface threaded in the interim. The package has announced both moves in its own release notes.

Q
qqman
ANALYTICS
0.0

The Manhattan-plot package for GWAS results, finished and dormant since 2017.

◆ Current state

qqman does two things: manhattan() and qq() plots for genome-wide association study results. Its six visible releases run from 2014 to a single 2017 packaging fix, and the last release with any user-facing change shipped in 2015. The archive is non-monotonic — a 0.0.0 tag published after 0.1.1 archives the pre-package standalone script — so version order and publication order disagree.

◆ Where it's heading

The real development window was 2014 to 2015. The 0.1.2 release did the substantive work, replacing the assumption that SNPs are evenly distributed across chromosomes and handing users control of axis limits, labels and log transformation; 0.1.3 then added annotation by p-value threshold and top-SNP-per-chromosome. After that the package stops. Notably, the archival 0.0.0 entry records that the original script had confidence intervals on QQ plots and richer highlighting than the released package ever regained.

◆ Prediction

With one packaging fix in the last decade, these entries support no prediction of further releases. The package reads as complete for its narrow purpose rather than abandoned mid-arc.

Alternatives to cheapr and qqman

Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either cheapr or qqman.

See all cheapr alternatives → · See all qqman alternatives →

Recent activity from cheapr and qqman

Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.

  1. 1mo agocheaprrep_len_ crash on shrinking lengths fixed
  2. 4mo agocheaprNon-API R internals removed
  3. 4mo agocheaprParallelised math, thread control, and a C API rewrite
  4. 1y agocheaprSubsetting speedups; sset_col negative-index crash fixed
  5. 1y agocheaprdf_modify added; attribute helpers renamed for intent
  6. 1y agocheaprcounts and str_coalesce added; reconstruct renamed to rebuild
  7. 9y agoqqmanREADME image path fix for pandoc
  8. 11y agoqqmanAnnotate SNPs by p-value threshold or per-chromosome top hit
  9. 11y agoqqmanChromosome ticks stop assuming even SNP spacing; axis control opens up
  10. 12y agoqqmanArchival tag for the pre-package standalone script
  11. 12y agoqqmanVignette touch-up
  12. 12y agoqqmanZenodo archival tag, no code change

Frequently asked questions

What is the difference between cheapr and qqman?

They serve adjacent needs but don't currently overlap on shipped themes. cheapr and qqman are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.

Is cheapr better than qqman?

Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. cheapr and qqman are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.

What are the best alternatives to cheapr?

Top cheapr alternatives in Analytics are ranked by recent ship velocity. Browse the "cheapr alternatives" section above for the current picks, or visit /alternatives/cheapr-r for the full list with editorial commentary on each.

What are the best alternatives to qqman?

Top qqman alternatives in Analytics are ranked by recent ship velocity. Browse the "qqman alternatives" section above for the current picks, or visit /alternatives/qqman-r for the full list with editorial commentary on each.