Rpath
Rpath 1.1.0 learns to read Ecopath's own files, easing migration off the desktop tool.
Comparison · Analytics
broman vs gwasvcf
A side-by-side editorial comparison of broman and gwasvcf — release velocity, themes, recent moves, and the top alternatives to consider.
broman vs gwasvcf: at a glance
What is broman?
A statistician's personal toolbox, growing one plotting utility at a time
broman is Karl Broman's collection of personal R utilities — base-graphics plotting helpers such as grayplot, dotplot and timeplot, running-window summaries, and assorted conveniences. Recent releases alternate between small additions, like runningratio2() with an adaptive window sized to hit a target denominator, and narrow bug fixes in crayons() and jiggle(). Version 0.92 removes an include that had begun warning on CRAN.
What is gwasvcf?
gwasvcf has stopped adding features and now just keeps proxy matching from failing.
gwasvcf reads and queries GWAS summary statistics stored as VCF, with LD proxy lookup as its most-used entry point. Every release in the visible window is a fix, and all but one land in or around proxy_match(). The last functional addition was gwasvcf_to_summaryset() in 0.1.2, which hands data to gwasglue2 rather than doing new work here.
broman vs gwasvcf: editorial side-by-side
broman
0.0ANALYTICS
A statistician's personal toolbox, growing one plotting utility at a time
◆ Current state
broman is Karl Broman's collection of personal R utilities — base-graphics plotting helpers such as grayplot, dotplot and timeplot, running-window summaries, and assorted conveniences. Recent releases alternate between small additions, like runningratio2() with an adaptive window sized to hit a target denominator, and narrow bug fixes in crayons() and jiggle(). Version 0.92 removes an include that had begun warning on CRAN.
◆ Where it's heading
The additions cluster around two themes: time-axis plotting and running-window summaries, both of which have been extended across several releases. Nothing here is planned in the usual sense — functions appear when the author needs them and bugs are fixed when they surface downstream, as jiggle() did through dotplot(). The C-level cleanup in 0.92 matches the same change made to R/qtl the same week, which is what maintaining a set of packages under one author looks like.
◆ Prediction
Both recent function additions extend existing families rather than starting new ones, so the next release is most likely another variant in the running-window or time-plotting group, or a fix surfaced by one of the author's other packages.
gwasvcf
0.0ANALYTICS
gwasvcf has stopped adding features and now just keeps proxy matching from failing.
◆ Current state
gwasvcf reads and queries GWAS summary statistics stored as VCF, with LD proxy lookup as its most-used entry point. Every release in the visible window is a fix, and all but one land in or around proxy_match(). The last functional addition was gwasvcf_to_summaryset() in 0.1.2, which hands data to gwasglue2 rather than doing new work here.
◆ Where it's heading
The package is in custodial maintenance inside the MRC IEU OpenGWAS stack, and its releases are reactive: each one answers a specific user-reported failure, credited to the reporter. The 0.1.6 pattern is telling — rather than replace the proxy VCF construction, it keeps the original path and adds a fallback only for inputs that fail, so existing results are left bit-for-bit unchanged.
◆ Prediction
Expect further narrow robustness fixes to proxy_match() driven by user-reported VCF shapes; nothing in the entries suggests new analysis capability is being built here rather than in gwasglue2.
Alternatives to broman and gwasvcf
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either broman or gwasvcf.
TAF
TAF keeps turning ICES stock assessments into reproducible, dependency-pinned projects.
parallelDist
parallelDist is in pure preservation mode — one build fix every few years.
cairo
Cairo finally catches R's graphics engine, all the way to GE API 16.
rjdqa
rjdqa keeps refining one screen: the seasonal adjustment quality dashboard
epikit
epikit narrows to field-epidemiology helpers, handing proportions to a sibling package
See all broman alternatives → · See all gwasvcf alternatives →
Recent activity from broman and gwasvcf
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 5mo agogwasvcfproxy_match() gains a fallback VCF construction path
- 8mo agobromanRemove R_ext/PrtUtil.h include flagged by CRAN
- 8mo agogwasvcfproxy_match() handles multi-sample VCFs
- 10mo agobromanFix exact-name matching in crayons()
- 11mo agobromanFix jiggle() with factors missing levels
- 1y agobromanrunningratio2() uses an adaptive window
- 1y agogwasvcfsqlite3 declared in SystemRequirements
- 1y agogwasvcfMessage fix in get_ld_proxies()
- 2y agobromantimeplot() added; running functions accept NAs
- 2y agobromantime_axis() added for date-time axis labels
- 2y agogwasvcfgwasvcf_to_summaryset() bridges to gwasglue2
Frequently asked questions
What is the difference between broman and gwasvcf?
They serve adjacent needs but don't currently overlap on shipped themes. broman and gwasvcf are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is broman better than gwasvcf?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. broman and gwasvcf are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to broman?
Top broman alternatives in Analytics are ranked by recent ship velocity. Browse the "broman alternatives" section above for the current picks, or visit /alternatives/broman-r for the full list with editorial commentary on each.
What are the best alternatives to gwasvcf?
Top gwasvcf alternatives in Analytics are ranked by recent ship velocity. Browse the "gwasvcf alternatives" section above for the current picks, or visit /alternatives/gwasvcf for the full list with editorial commentary on each.