EvoPhylo
EvoPhylo added BEAST2 alongside MrBayes, then went quiet for two years.
Comparison · Analytics
broman vs deeptime
A side-by-side editorial comparison of broman and deeptime — release velocity, themes, recent moves, and the top alternatives to consider.
broman vs deeptime: at a glance
What is broman?
A statistician's personal toolbox, growing one plotting utility at a time
broman is Karl Broman's collection of personal R utilities — base-graphics plotting helpers such as grayplot, dotplot and timeplot, running-window summaries, and assorted conveniences. Recent releases alternate between small additions, like runningratio2() with an adaptive window sized to hit a target denominator, and narrow bug fixes in crayons() and jiggle(). Version 0.92 removes an include that had begun warning on CRAN.
What is deeptime?
A geologic-time plotting layer that outgrew time axes and became a geology rendering toolkit.
deeptime extends ggplot2 with geological time scales, radial deep-time coordinates and phylogeny-aware geoms, and since 2.0.0 it also renders standardized FGDC/USGS geologic patterns as ggplot2 fills. The current 2.4.0 release adds geom_text_clade() for labeling clades on radial phylogenies and repairs long-standing coord_trans_xy() and scale-placement edge cases.
broman vs deeptime: editorial side-by-side
broman
0.0ANALYTICS
A statistician's personal toolbox, growing one plotting utility at a time
◆ Current state
broman is Karl Broman's collection of personal R utilities — base-graphics plotting helpers such as grayplot, dotplot and timeplot, running-window summaries, and assorted conveniences. Recent releases alternate between small additions, like runningratio2() with an adaptive window sized to hit a target denominator, and narrow bug fixes in crayons() and jiggle(). Version 0.92 removes an include that had begun warning on CRAN.
◆ Where it's heading
The additions cluster around two themes: time-axis plotting and running-window summaries, both of which have been extended across several releases. Nothing here is planned in the usual sense — functions appear when the author needs them and bugs are fixed when they surface downstream, as jiggle() did through dotplot(). The C-level cleanup in 0.92 matches the same change made to R/qtl the same week, which is what maintaining a set of packages under one author looks like.
◆ Prediction
Both recent function additions extend existing families rather than starting new ones, so the next release is most likely another variant in the running-window or time-plotting group, or a fix surfaced by one of the author's other packages.
deeptime
0.0ANALYTICS
A geologic-time plotting layer that outgrew time axes and became a geology rendering toolkit.
◆ Current state
deeptime extends ggplot2 with geological time scales, radial deep-time coordinates and phylogeny-aware geoms, and since 2.0.0 it also renders standardized FGDC/USGS geologic patterns as ggplot2 fills. The current 2.4.0 release adds geom_text_clade() for labeling clades on radial phylogenies and repairs long-standing coord_trans_xy() and scale-placement edge cases.
◆ Where it's heading
The package is converging on two jobs: being the canonical R renderer for stratigraphic drawing conventions, and keeping pace with ggplot2's own churn. A sustained deprecation program — gggeo_scale(), coord_geo_polar(), getScaleData(), now disparity_through_time() — is trimming the surface down to coord_geo(), coord_geo_radial() and the pattern functions. Roughly half of each recent release is ggplot2 4.0 compatibility work.
◆ Prediction
Expect disparity_through_time() and coord_geo_polar() to be removed outright in the next major version, and further geoms aimed at annotating radial phylogenies.
Alternatives to broman and deeptime
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either broman or deeptime.
treespace
treespace ships once every year or two, and only when CRAN or a user forces it.
Rpath
Rpath 1.1.0 learns to read Ecopath's own files, easing migration off the desktop tool.
TAF
TAF keeps turning ICES stock assessments into reproducible, dependency-pinned projects.
parallelDist
parallelDist is in pure preservation mode — one build fix every few years.
cairo
Cairo finally catches R's graphics engine, all the way to GE API 16.
See all broman alternatives → · See all deeptime alternatives →
Recent activity from broman and deeptime
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 1mo agodeeptimegeom_text_clade() labels clades on radial phylogenies
- 8mo agobromanRemove R_ext/PrtUtil.h include flagged by CRAN
- 8mo agodeeptimeArgument renames for ggplot2 4.0 parity
- 8mo agodeeptimePattern code dictionary and time-scale theming
- 10mo agobromanFix exact-name matching in crayons()
- 11mo agobromanFix jiggle() with factors missing levels
- 1y agodeeptimegeom_text_phylo() arrives with ggplot2 4 compatibility
- 1y agobromanrunningratio2() uses an adaptive window
- 1y agodeeptimeContrast-aware label colors across the built-in scales
- 1y agodeeptimeFGDC geologic patterns become ggplot2 fills ⚡
- 2y agobromantimeplot() added; running functions accept NAs
- 2y agobromantime_axis() added for date-time axis labels
Frequently asked questions
What is the difference between broman and deeptime?
They serve adjacent needs but don't currently overlap on shipped themes. broman and deeptime are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is broman better than deeptime?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. broman and deeptime are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to broman?
Top broman alternatives in Analytics are ranked by recent ship velocity. Browse the "broman alternatives" section above for the current picks, or visit /alternatives/broman-r for the full list with editorial commentary on each.
What are the best alternatives to deeptime?
Top deeptime alternatives in Analytics are ranked by recent ship velocity. Browse the "deeptime alternatives" section above for the current picks, or visit /alternatives/deeptime-r for the full list with editorial commentary on each.