rnaturalearth
rnaturalearth finished its sp exit and is now optimising how the data actually arrives.
Comparison · Analytics
bonsai vs rgbif
A side-by-side editorial comparison of bonsai and rgbif — release velocity, themes, recent moves, and the top alternatives to consider.
bonsai vs rgbif: at a glance
What is bonsai?
bonsai keeps widening tidymodels' boosted-tree engine bench, catboost most recently
bonsai exists to attach non-core tree engines to parsnip's boost_tree() and rand_forest(), and the release history reads as a steady accumulation of them: partykit, aorsf, lightgbm, and now catboost. The 0.4.x line is spent making catboost behave like a full tidymodels citizen rather than adding anything new.
What is rgbif?
rgbif is steadily pushing users off paged searching and onto real downloads.
rgbif ships several times a year and the recent releases cluster around downloads. 3.8.1 added `occ_download_sql()` for SQL-based occurrence downloads; 3.8.2 added DOI-to-download-key resolution and institutionKey downloads; 3.8.3 relayed GBIF's new throttling of bulk paging through `occ_search()` with a message pointing users at `occ_download()`; 3.8.5 added a family of `occ_download_stats_*()` functions plus multiple-taxonomy and verbatim-extension downloads. Alongside that, `name_backbone()` moved to GBIF API v2, and 3.8.0 soft-deprecated `occ_data()`.
bonsai vs rgbif: editorial side-by-side
bonsai
0.0ANALYTICS
bonsai keeps widening tidymodels' boosted-tree engine bench, catboost most recently
◆ Current state
bonsai exists to attach non-core tree engines to parsnip's boost_tree() and rand_forest(), and the release history reads as a steady accumulation of them: partykit, aorsf, lightgbm, and now catboost. The 0.4.x line is spent making catboost behave like a full tidymodels citizen rather than adding anything new.
◆ Where it's heading
Each engine follows the same arc — land it, then close the gaps that keep it from tuning cleanly (parameter naming, multi_predict, threading, case weights). Recent work is squarely in that second phase for catboost, with dials supplying the matching parameter objects on its own release schedule. Bug-fix density is high relative to new surface.
◆ Prediction
Expect the catboost integration to keep filling in tuning and GPU-related arguments before any further engine is added; the entries give no signal about which engine would come next.
rgbif
0.0ANALYTICS
rgbif is steadily pushing users off paged searching and onto real downloads.
◆ Current state
rgbif ships several times a year and the recent releases cluster around downloads. 3.8.1 added `occ_download_sql()` for SQL-based occurrence downloads; 3.8.2 added DOI-to-download-key resolution and institutionKey downloads; 3.8.3 relayed GBIF's new throttling of bulk paging through `occ_search()` with a message pointing users at `occ_download()`; 3.8.5 added a family of `occ_download_stats_*()` functions plus multiple-taxonomy and verbatim-extension downloads. Alongside that, `name_backbone()` moved to GBIF API v2, and 3.8.0 soft-deprecated `occ_data()`.
◆ Where it's heading
Two things are happening at once. GBIF is discouraging bulk retrieval through the search API, and rgbif is building out the download path fast enough to absorb the traffic — SQL queries, DOI round-tripping, format description, and now statistics about the downloads themselves. Metadata coverage has expanded in parallel, with a dozen `dataset_*()` functions in 3.7.9 and GRSciColl institution search in 3.8.3. The deprecations are consistent: `occ_data()`, `occ_facet()`, `occ_count(type=)` all retired in favour of narrower replacements.
◆ Prediction
The download surface is where the next additions will land — likely more SQL-download tooling and further statistics endpoints, following 3.8.1 and 3.8.5.
Alternatives to bonsai and rgbif
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either bonsai or rgbif.
writexl
writexl spent nine years refusing to do formatting, then shipped all of it in 2.0.0.
rstanarm
rstanarm is community-maintained now, tracking Stan and lme4 rather than adding models.
taxa
taxa started a ground-up rewrite in 2021 and has published almost nothing since.
rotl
rotl's whole release history is keeping name matching honest against a moving taxonomy.
taxize
taxize spends its releases absorbing other people's API changes, one dead source at a time.
See all bonsai alternatives → · See all rgbif alternatives →
Recent activity from bonsai and rgbif
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 2mo agobonsaicatboost gains multi_predict() and corrected tuning parameters
- 4mo agorgbifrgbif 3.8.5 adds occurrence download statistics functions
- 8mo agorgbifrgbif 3.8.4 moves name matching to GBIF API v2
- 11mo agorgbifrgbif 3.8.3 adds GRSciColl search, relays GBIF paging throttle
- 1y agobonsaicatboost engine added to boost_tree()
- 1y agorgbifrgbif 3.8.2 resolves download DOIs to keys
- 1y agobonsailightgbm accepts sparse matrices for fit and predict
- 1y agorgbifrgbif 3.8.1 adds SQL-based occurrence downloads ⚡
- 2y agobonsaiaorsf fit failure in multisession workers fixed
- 2y agobonsaiaorsf engine added; lightgbm gains dataset params and case weights
- 2y agorgbifrgbif 3.8.0 soft-deprecates occ_data(), adds download describe
- 3y agobonsailightgbm num_leaves becomes tunable; alias arguments disallowed
Frequently asked questions
What is the difference between bonsai and rgbif?
They serve adjacent needs but don't currently overlap on shipped themes. bonsai and rgbif are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is bonsai better than rgbif?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. bonsai and rgbif are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to bonsai?
Top bonsai alternatives in Analytics are ranked by recent ship velocity. Browse the "bonsai alternatives" section above for the current picks, or visit /alternatives/bonsai-r for the full list with editorial commentary on each.
What are the best alternatives to rgbif?
Top rgbif alternatives in Analytics are ranked by recent ship velocity. Browse the "rgbif alternatives" section above for the current picks, or visit /alternatives/rgbif for the full list with editorial commentary on each.