rnaturalearth
rnaturalearth finished its sp exit and is now optimising how the data actually arrives.
Comparison · Analytics
bonsai vs modelbased
A side-by-side editorial comparison of bonsai and modelbased — release velocity, themes, recent moves, and the top alternatives to consider.
bonsai vs modelbased: at a glance
What is bonsai?
bonsai keeps widening tidymodels' boosted-tree engine bench, catboost most recently
bonsai exists to attach non-core tree engines to parsnip's boost_tree() and rand_forest(), and the release history reads as a steady accumulation of them: partykit, aorsf, lightgbm, and now catboost. The 0.4.x line is spent making catboost behave like a full tidymodels citizen rather than adding anything new.
What is modelbased?
modelbased is turning marginal effects into a full contrast grammar
modelbased computes marginal means, contrasts, and slopes from fitted models, and it ships every one to two months with a consistent shape: new comparison types, broader model support, and steady renaming toward clearer vocabulary. The recent arc runs from marginal effects inequality measures through inequality ratios to an omnibus global test and a post_process argument for multi-step comparisons. Argument names have been settled along the way, with trend becoming slope and an alias left behind.
bonsai vs modelbased: editorial side-by-side
bonsai
0.0ANALYTICS
bonsai keeps widening tidymodels' boosted-tree engine bench, catboost most recently
◆ Current state
bonsai exists to attach non-core tree engines to parsnip's boost_tree() and rand_forest(), and the release history reads as a steady accumulation of them: partykit, aorsf, lightgbm, and now catboost. The 0.4.x line is spent making catboost behave like a full tidymodels citizen rather than adding anything new.
◆ Where it's heading
Each engine follows the same arc — land it, then close the gaps that keep it from tuning cleanly (parameter naming, multi_predict, threading, case weights). Recent work is squarely in that second phase for catboost, with dials supplying the matching parameter objects on its own release schedule. Bug-fix density is high relative to new surface.
◆ Prediction
Expect the catboost integration to keep filling in tuning and GPU-related arguments before any further engine is added; the entries give no signal about which engine would come next.
modelbased
0.0ANALYTICS
modelbased is turning marginal effects into a full contrast grammar
◆ Current state
modelbased computes marginal means, contrasts, and slopes from fitted models, and it ships every one to two months with a consistent shape: new comparison types, broader model support, and steady renaming toward clearer vocabulary. The recent arc runs from marginal effects inequality measures through inequality ratios to an omnibus global test and a post_process argument for multi-step comparisons. Argument names have been settled along the way, with trend becoming slope and an alias left behind.
◆ Where it's heading
The package is building a compositional vocabulary rather than a fixed menu — contrasts of average slopes, contrasts across two numeric predictors, inequality summaries across all outcome categories, and now user-supplied post-processing of comparisons. Support quietly widens underneath, covering nestedLogit, brms finite mixtures, and offsets under population and average estimation. Plotting gets attention in proportion to how often these results are presented rather than tabulated, including collapse_by_group() for showing averaged raw data under mixed-model fits.
◆ Prediction
With post_process and omnibus tests both landed, the likely next step is making these composed comparisons easier to report — formatting or plotting methods for the multi-step results rather than new comparison types.
Alternatives to bonsai and modelbased
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either bonsai or modelbased.
writexl
writexl spent nine years refusing to do formatting, then shipped all of it in 2.0.0.
rgbif
rgbif is steadily pushing users off paged searching and onto real downloads.
rstanarm
rstanarm is community-maintained now, tracking Stan and lme4 rather than adding models.
taxa
taxa started a ground-up rewrite in 2021 and has published almost nothing since.
rotl
rotl's whole release history is keeping name matching honest against a moving taxonomy.
See all bonsai alternatives → · See all modelbased alternatives →
Recent activity from bonsai and modelbased
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 1mo agomodelbasedmodelbased 0.16.0 adds post-processing and omnibus contrast tests
- 2mo agobonsaicatboost gains multi_predict() and corrected tuning parameters
- 3mo agomodelbasedmodelbased 0.15.0 contrasts average slopes across numeric predictors
- 5mo agomodelbasedmodelbased 0.14.0 renames trend to slope and adds collapse_by_group()
- 8mo agomodelbasedmodelbased 0.13.1 adds marginal group-level estimates and as.data.frame()
- 11mo agomodelbasedmodelbased 0.13.0 adds inequality ratios and slope marginalization
- 1y agomodelbasedmodelbased 0.12.0 introduces marginal effects inequality measures
- 1y agobonsaicatboost engine added to boost_tree()
- 1y agobonsailightgbm accepts sparse matrices for fit and predict
- 2y agobonsaiaorsf fit failure in multisession workers fixed
- 2y agobonsaiaorsf engine added; lightgbm gains dataset params and case weights
- 3y agobonsailightgbm num_leaves becomes tunable; alias arguments disallowed
Frequently asked questions
What is the difference between bonsai and modelbased?
They serve adjacent needs but don't currently overlap on shipped themes. bonsai and modelbased are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is bonsai better than modelbased?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. bonsai and modelbased are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to bonsai?
Top bonsai alternatives in Analytics are ranked by recent ship velocity. Browse the "bonsai alternatives" section above for the current picks, or visit /alternatives/bonsai-r for the full list with editorial commentary on each.
What are the best alternatives to modelbased?
Top modelbased alternatives in Analytics are ranked by recent ship velocity. Browse the "modelbased alternatives" section above for the current picks, or visit /alternatives/modelbased for the full list with editorial commentary on each.