TidyDensity
A distribution catalogue that grows by one family at a time, and rarely breaks anything.
Comparison · Analytics
bagyo vs GeneNMF
A side-by-side editorial comparison of bagyo and GeneNMF — release velocity, themes, recent moves, and the top alternatives to consider.
bagyo vs GeneNMF: at a glance
What is bagyo?
bagyo reached CRAN as a Philippine tropical cyclone dataset, with its tags stamped out of order.
A data package distributing Philippine Area of Responsibility tropical cyclone records, developed through 2024 pre-releases and accepted by CRAN in early 2026. The substantive release is v0.2.0: 2021 and 2022 typhoon data added, an unexported helper for downloading cyclone reports, CITATION.cff, an R 4.1 dependency for the base pipe, and a full pass over vignettes, tests and README. The v0.1.1 tag announcing the first CRAN release carries no content and is stamped two hours after v0.2.0.
What is GeneNMF?
GeneNMF rebuilt how it derives meta-programs, changing every result it had produced.
GeneNMF applies non-negative matrix factorization to single-cell expression data to find gene programs, then consolidates programs recurring across samples into meta-programs. Version 0.6.0 replaced the consolidation method: instead of reducing each program to a gene set and taking a consensus, it retains full gene weight vectors and compares them by cosine similarity. Later releases have built reporting and control around that core — a metaprogram composition matrix showing which samples contributed, custom signature databases for enrichment testing, and the ability to drop meta-programs from results.
bagyo vs GeneNMF: editorial side-by-side
bagyo
0.0ANALYTICS
bagyo reached CRAN as a Philippine tropical cyclone dataset, with its tags stamped out of order.
◆ Current state
A data package distributing Philippine Area of Responsibility tropical cyclone records, developed through 2024 pre-releases and accepted by CRAN in early 2026. The substantive release is v0.2.0: 2021 and 2022 typhoon data added, an unexported helper for downloading cyclone reports, CITATION.cff, an R 4.1 dependency for the base pipe, and a full pass over vignettes, tests and README. The v0.1.1 tag announcing the first CRAN release carries no content and is stamped two hours after v0.2.0.
◆ Where it's heading
The package is establishing itself as a citable, yearly-updated dataset rather than a one-off scrape — the download helper and the '2022 data and general yearly upkeep' commit both point at a recurring refresh, and the CRAN DOI and CITATION file exist so the data can be cited in papers. It sits alongside the same maintainer's other public-health and survey data packages, which received matching repository upkeep in the same month.
◆ Prediction
Expect an annual data release adding the next typhoon season, since that is the only recurring change in the history and the download helper was written to support it.
GeneNMF
0.0ANALYTICS
GeneNMF rebuilt how it derives meta-programs, changing every result it had produced.
◆ Current state
GeneNMF applies non-negative matrix factorization to single-cell expression data to find gene programs, then consolidates programs recurring across samples into meta-programs. Version 0.6.0 replaced the consolidation method: instead of reducing each program to a gene set and taking a consensus, it retains full gene weight vectors and compares them by cosine similarity. Later releases have built reporting and control around that core — a metaprogram composition matrix showing which samples contributed, custom signature databases for enrichment testing, and the ability to drop meta-programs from results.
◆ Where it's heading
The package is moving from producing meta-programs to letting users interrogate and constrain how they were formed. Composition matrices, the drop function and downsampled similarity heatmaps all serve inspection rather than derivation. The parameters added alongside the 0.6.0 rewrite — specificity weighting, cumulative weight thresholds, confidence defined as the fraction of programs containing a gene — turn what were fixed internal choices into stated, tunable ones.
◆ Prediction
Recent releases have been fixes and compatibility work rather than method changes, so the core approach appears settled. The dependency on an RcppML version not on CRAN is the loose end most likely to force the next release.
Alternatives to bagyo and GeneNMF
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either bagyo or GeneNMF.
cfbfastr
College football's open data client hit v2 — and now reports how many API calls you have left.
rnpn
The USA phenology data client rebuilt its entire stack and stopped handing users -9999 as a number.
rempsyc
Publication-ready psychology tables and plots, tracking APA style as closely as the software allows.
sdsfun
A spatial-statistics utility package exists to be depended on, and is built accordingly.
eulerr
The area-proportional Euler diagram package is finished software, and maintained like it.
See all bagyo alternatives → · See all GeneNMF alternatives →
Recent activity from bagyo and GeneNMF
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 7mo agobagyobagyo v0.1.1
- 7mo agobagyo2021 and 2022 typhoon data added
- 11mo agoGeneNMFSingle-sample runs fixed; gene weight definition refined
- 1y agoGeneNMFMetaprogram composition exposed and custom signature DBs supported
- 1y agoGeneNMFSimilarity heatmap downsampling and meta-program removal
- 2y agoGeneNMFMeta-programs rebuilt on gene weight vectors and cosine similarity ⚡
- 2y agobagyoPre-release for Zenodo archiving
- 2y agobagyoInitial pre-release
- 2y agoGeneNMFFirst stable release published to CRAN
Frequently asked questions
What is the difference between bagyo and GeneNMF?
They serve adjacent needs but don't currently overlap on shipped themes. bagyo and GeneNMF are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is bagyo better than GeneNMF?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. bagyo and GeneNMF are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to bagyo?
Top bagyo alternatives in Analytics are ranked by recent ship velocity. Browse the "bagyo alternatives" section above for the current picks, or visit /alternatives/bagyo for the full list with editorial commentary on each.
What are the best alternatives to GeneNMF?
Top GeneNMF alternatives in Analytics are ranked by recent ship velocity. Browse the "GeneNMF alternatives" section above for the current picks, or visit /alternatives/genenmf for the full list with editorial commentary on each.