paleobuddy
paleobuddy can now simulate trait-dependent diversification, not just birth-death.
Comparison · Analytics
timeplyr vs treespace
A side-by-side editorial comparison of timeplyr and treespace — release velocity, themes, recent moves, and the top alternatives to consider.
timeplyr vs treespace: at a glance
What is timeplyr?
timeplyr cut everything that wasn't time, then rebuilt intervals as fixed-width vectors.
timeplyr is a time-aware companion to dplyr and data.table, built around a fixed-width time_interval vector class. The 1.0.0 rewrite removed most non-time functions and pushed the C++ layer out into the separate cheapr package, leaving a narrower surface than the 0.8.x line. Releases since have been small: one feature batch in 1.1.1 and a pair of bug fixes in 1.1.2.
What is treespace?
treespace ships once every year or two, and only when CRAN or a user forces it.
treespace explores and compares sets of phylogenetic and transmission trees, including the tree-distance measures used in outbreak reconstruction. Its release history is entirely reactive: five updates across five years, each triggered by a CRAN policy change, an upstream package removal, or a bug someone reported. The most recent is an Rd cross-reference format patch plus a maintainer email change.
timeplyr vs treespace: editorial side-by-side
timeplyr
0.0ANALYTICS
timeplyr cut everything that wasn't time, then rebuilt intervals as fixed-width vectors.
◆ Current state
timeplyr is a time-aware companion to dplyr and data.table, built around a fixed-width time_interval vector class. The 1.0.0 rewrite removed most non-time functions and pushed the C++ layer out into the separate cheapr package, leaving a narrower surface than the 0.8.x line. Releases since have been small: one feature batch in 1.1.1 and a pair of bug fixes in 1.1.2.
◆ Where it's heading
The arc is consolidation, not expansion. Each release since 1.0.0 trims arguments, renames functions toward a single vocabulary (width, timespan, grid), or fixes an interaction with data.table's own rolling functions. The package increasingly acts as a thin time layer over cheapr and data.table rather than carrying its own implementation.
◆ Prediction
Expect continued small releases tracking cheapr and data.table changes rather than new function families; the entries show no in-progress feature work beyond the ggplot2-friendly breakpoint helpers introduced in 1.1.1.
treespace
0.0ANALYTICS
treespace ships once every year or two, and only when CRAN or a user forces it.
◆ Current state
treespace explores and compares sets of phylogenetic and transmission trees, including the tree-distance measures used in outbreak reconstruction. Its release history is entirely reactive: five updates across five years, each triggered by a CRAN policy change, an upstream package removal, or a bug someone reported. The most recent is an Rd cross-reference format patch plus a maintainer email change.
◆ Where it's heading
The package is stable and lightly staffed rather than abandoned — bugs that affect correctness do get fixed, and CRAN deadlines are met. But the 2023 update is the telling one: rather than vendor or replace adephylo when it faced removal, the maintainers disabled two tree-vector methods and marked the loss as hopefully temporary. Two years on, nothing in the feed indicates they came back.
◆ Prediction
The next entry will most likely be another CRAN-compliance patch, on the pattern of four of the last five releases. Whether the Abouheif and sumDD methods ever return is not something these entries give any signal on.
Alternatives to timeplyr and treespace
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either timeplyr or treespace.
geodist
geodist stays dependency-free and fast, and warns you when 'cheap' distances stop being honest.
errors
errors keeps making uncertainty print the way each scientific field expects.
CMAQ
CMAQ went global in v5.5, and has been patching that surface ever since.
enpls
enpls has not changed its statistics since 2016 — only its website, twice.
grex
grex is a lookup table with a version number — it ships when the annotation moves.
See all timeplyr alternatives → · See all treespace alternatives →
Recent activity from timeplyr and treespace
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 4mo agotimeplyrLeap-day and time_complete(.by=) bug fixes
- 10mo agotimeplyrtime_breakpoints added; rolling calcs realigned to data.table
- 11mo agotreespacetreespace patches Rd cross-references for CRAN
- 1y agotimeplyrFixed-width time intervals; non-time functions removed ⚡
- 1y agotimeplyrtime_intervals on by default; year_month/year_quarter ggplot2 scales
- 2y agotimeplyrRegression fixes after the 0.8.0 refactor
- 2y agotimeplyrC++ layer moved to cheapr; time_interval class introduced
- 2y agotreespacetreespace disables Abouheif and sumDD as adephylo exits CRAN
- 3y agotreespacetreespace fixes vignette build on NA tree names
- 5y agotreespacetreespace fixes dist indexing that broke its tests
- 5y agotreespacetreespace corrects tip label handling in transmission distances
Frequently asked questions
What is the difference between timeplyr and treespace?
They serve adjacent needs but don't currently overlap on shipped themes. timeplyr and treespace are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is timeplyr better than treespace?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. timeplyr and treespace are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to timeplyr?
Top timeplyr alternatives in Analytics are ranked by recent ship velocity. Browse the "timeplyr alternatives" section above for the current picks, or visit /alternatives/timeplyr for the full list with editorial commentary on each.
What are the best alternatives to treespace?
Top treespace alternatives in Analytics are ranked by recent ship velocity. Browse the "treespace alternatives" section above for the current picks, or visit /alternatives/treespace-r for the full list with editorial commentary on each.