tidyterra
tidyterra finished wiring terra objects into the tidyverse, one verb family at a time.
Comparison · Analytics
socialmixr vs vegan
A side-by-side editorial comparison of socialmixr and vegan — release velocity, themes, recent moves, and the top alternatives to consider.
socialmixr vs vegan: at a glance
What is socialmixr?
socialmixr breaks its one-shot contact_matrix() call into a composable pipeline.
socialmixr builds age-structured social contact matrices from survey data for infectious-disease modelling. Version 0.6.0 replaces the monolithic contact_matrix() entry point with a chain of composable steps — filter, assign age groups, weigh, compute, then symmetrise, split or convert per capita — behind a new contact_matrix S3 class. Survey downloading is being handed off to a separate contactsurveys package.
What is vegan?
Community ecology's standard toolkit is retiring the functions a generation of scripts was built on.
vegan is the reference R package for ordination and diversity analysis in community ecology. The 2.7 line redesigned constrained ordination graphics from scratch, made adonis defunct in favor of adonis2, and moved permutation tests for partial RDA and db-RDA onto residualized predictors. The current 2.7-5 release is stabilization — parallel processing on Windows, ggvegan compatibility for tidy scores, and arrow label placement.
socialmixr vs vegan: editorial side-by-side
socialmixr
0.0ANALYTICS
socialmixr breaks its one-shot contact_matrix() call into a composable pipeline.
◆ Current state
socialmixr builds age-structured social contact matrices from survey data for infectious-disease modelling. Version 0.6.0 replaces the monolithic contact_matrix() entry point with a chain of composable steps — filter, assign age groups, weigh, compute, then symmetrise, split or convert per capita — behind a new contact_matrix S3 class. Survey downloading is being handed off to a separate contactsurveys package.
◆ Where it's heading
The arc from 0.4.0 to 0.6.0 is decomposition: first extracting helpers like assign_age_groups(), then moving downloads out of the package, and now exposing every stage of matrix construction as its own verb. Breaking changes are accepted at each step — preserved empty age groups, arrays instead of xtabs, [N,Inf) labels — with the new class inheriting from list so existing $matrix access keeps working. The label change is explicitly aligned with the contactmatrix package.
◆ Prediction
Expect the deprecated dotted argument names and the remaining in-package download paths to be removed once the contactsurveys handoff completes, leaving contact_matrix() as a thin wrapper over the pipeline.
vegan
0.0ANALYTICS
Community ecology's standard toolkit is retiring the functions a generation of scripts was built on.
◆ Current state
vegan is the reference R package for ordination and diversity analysis in community ecology. The 2.7 line redesigned constrained ordination graphics from scratch, made adonis defunct in favor of adonis2, and moved permutation tests for partial RDA and db-RDA onto residualized predictors. The current 2.7-5 release is stabilization — parallel processing on Windows, ggvegan compatibility for tidy scores, and arrow label placement.
◆ Where it's heading
Two long deprecation programs are converging. Plotting is being pushed out of the package: lattice functions are deprecated in favor of ggplot2 equivalents now living in ggvegan, a separate CRAN package, while vegan's own base graphics were rebuilt around independently configurable score types and pipe-based construction. Meanwhile the statistical core is being made internally consistent — add1 and drop1 no longer use different internal models, and summary is no longer an accepted route to ordination scores.
◆ Prediction
Expect the remaining lattice functions to go defunct and more plotting responsibility to shift to ggvegan, leaving vegan as the statistical engine with a thin base graphics layer.
Alternatives to socialmixr and vegan
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either socialmixr or vegan.
mapSpain
mapSpain's 1.0.0 broke every user cache to get the package onto modern foundations.
wasserportal
A Berlin groundwater scraper grew a full IoT publishing pipeline in two days.
cheapr
cheapr turned multi-threaded, and its next stop is a C++20 public API.
RadialMR
RadialMR's 2026 release corrects degrees of freedom that had been wrong since documentation.
mrbayes
mrbayes spent 2026 auditing its own Bayesian MR estimators for coding errors.
See all socialmixr alternatives → · See all vegan alternatives →
Recent activity from socialmixr and vegan
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 2mo agoveganParallel processing stabilized, especially on Windows
- 3mo agosocialmixrContact matrices become a composable pipeline ⚡
- 5mo agoveganLattice plotting deprecated as ggvegan reaches CRAN
- 6mo agosocialmixrPatch: load_survey() handles files without cont_id
- 6mo agosocialmixrAge-group assignment and population lookup split out
- 10mo agoveganPartial RDA permutation tests adopt residualized predictors
- 1y agoveganOrdination graphics rebuilt and adonis made defunct ⚡
- 1y agoveganRelease chasing undefined behavior in a C function
- 1y agosocialmixrFaster survey loading and cached Zenodo lookups
- 1y agoveganpca, ca and pco added for unconstrained ordination
- 2y agosocialmixrcontact_matrix() now takes survey objects only
- 2y agosocialmixrTest fixes for machine-precision failures
Frequently asked questions
What is the difference between socialmixr and vegan?
They serve adjacent needs but don't currently overlap on shipped themes. socialmixr and vegan are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is socialmixr better than vegan?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. socialmixr and vegan are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to socialmixr?
Top socialmixr alternatives in Analytics are ranked by recent ship velocity. Browse the "socialmixr alternatives" section above for the current picks, or visit /alternatives/socialmixr for the full list with editorial commentary on each.
What are the best alternatives to vegan?
Top vegan alternatives in Analytics are ranked by recent ship velocity. Browse the "vegan alternatives" section above for the current picks, or visit /alternatives/vegan-r for the full list with editorial commentary on each.