paleobuddy
paleobuddy can now simulate trait-dependent diversification, not just birth-death.
Comparison · Analytics
redist vs treespace
A side-by-side editorial comparison of redist and treespace — release velocity, themes, recent moves, and the top alternatives to consider.
redist vs treespace: at a glance
What is redist?
redist keeps rewriting the sampler underneath a district-drawing API it has held stable since 4.0.
redist simulates redistricting plans via sequential Monte Carlo, merge-split MCMC and short-burst optimization, and it is the analysis tool behind a good deal of published districting work. The user-facing shape was set by 4.0.1's constraint interface and the split of metrics into the redistmetrics package; since then the changes are in the algorithms. The most consequential recent one replaces the SMC label-counting adjustment with a backward kernel that removes approximation error outright.
What is treespace?
treespace ships once every year or two, and only when CRAN or a user forces it.
treespace explores and compares sets of phylogenetic and transmission trees, including the tree-distance measures used in outbreak reconstruction. Its release history is entirely reactive: five updates across five years, each triggered by a CRAN policy change, an upstream package removal, or a bug someone reported. The most recent is an Rd cross-reference format patch plus a maintainer email change.
redist vs treespace: editorial side-by-side
redist
0.0ANALYTICS
redist keeps rewriting the sampler underneath a district-drawing API it has held stable since 4.0.
◆ Current state
redist simulates redistricting plans via sequential Monte Carlo, merge-split MCMC and short-burst optimization, and it is the analysis tool behind a good deal of published districting work. The user-facing shape was set by 4.0.1's constraint interface and the split of metrics into the redistmetrics package; since then the changes are in the algorithms. The most consequential recent one replaces the SMC label-counting adjustment with a backward kernel that removes approximation error outright.
◆ Where it's heading
The direction is toward exactness and throughput at once — the new kernel is described as both eliminating approximation error and costing far less computation, and successive releases keep adding parallelism, most recently to the flip algorithm. Feature growth has moved into the optimization side, where short-burst gained multiple independent scorers and a Pareto frontier. The release notes are not a reliable ledger: 4.3.1 ships the identical text as 4.3.0.
◆ Prediction
Expect the remaining single-threaded algorithms to gain the chains-style parallelism that flip just received, following the pattern SMC established several releases ago.
treespace
0.0ANALYTICS
treespace ships once every year or two, and only when CRAN or a user forces it.
◆ Current state
treespace explores and compares sets of phylogenetic and transmission trees, including the tree-distance measures used in outbreak reconstruction. Its release history is entirely reactive: five updates across five years, each triggered by a CRAN policy change, an upstream package removal, or a bug someone reported. The most recent is an Rd cross-reference format patch plus a maintainer email change.
◆ Where it's heading
The package is stable and lightly staffed rather than abandoned — bugs that affect correctness do get fixed, and CRAN deadlines are met. But the 2023 update is the telling one: rather than vendor or replace adephylo when it faced removal, the maintainers disabled two tree-vector methods and marked the loss as hopefully temporary. Two years on, nothing in the feed indicates they came back.
◆ Prediction
The next entry will most likely be another CRAN-compliance patch, on the pattern of four of the last five releases. Whether the Abouheif and sumDD methods ever return is not something these entries give any signal on.
Alternatives to redist and treespace
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either redist or treespace.
geodist
geodist stays dependency-free and fast, and warns you when 'cheap' distances stop being honest.
errors
errors keeps making uncertainty print the way each scientific field expects.
CMAQ
CMAQ went global in v5.5, and has been patching that surface ever since.
enpls
enpls has not changed its statistics since 2016 — only its website, twice.
grex
grex is a lookup table with a version number — it ships when the annotation moves.
See all redist alternatives → · See all treespace alternatives →
Recent activity from redist and treespace
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 6mo agoredistParallel chains for redist_flip()
- 6mo agoredistPatch release reusing the 4.3.0 notes
- 10mo agoredistSMC backward kernel removes label-counting approximation error
- 11mo agotreespacetreespace patches Rd cross-references for CRAN
- 2y agoredistMulti-objective short-burst search with Pareto frontier
- 2y agotreespacetreespace disables Abouheif and sumDD as adephylo exits CRAN
- 3y agotreespacetreespace fixes vignette build on NA tree names
- 3y agoredistredist_ci interface and faster loop-erased random walk
- 4y agoredistredist_constr() unifies constraints and admits user-defined ones ⚡
- 5y agotreespacetreespace fixes dist indexing that broke its tests
- 5y agotreespacetreespace corrects tip label handling in transmission distances
Frequently asked questions
What is the difference between redist and treespace?
They serve adjacent needs but don't currently overlap on shipped themes. redist and treespace are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is redist better than treespace?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. redist and treespace are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to redist?
Top redist alternatives in Analytics are ranked by recent ship velocity. Browse the "redist alternatives" section above for the current picks, or visit /alternatives/redist-r for the full list with editorial commentary on each.
What are the best alternatives to treespace?
Top treespace alternatives in Analytics are ranked by recent ship velocity. Browse the "treespace alternatives" section above for the current picks, or visit /alternatives/treespace-r for the full list with editorial commentary on each.