paleobuddy
paleobuddy can now simulate trait-dependent diversification, not just birth-death.
Comparison · Analytics
ravetools vs treespace
A side-by-side editorial comparison of ravetools and treespace — release velocity, themes, recent moves, and the top alternatives to consider.
ravetools vs treespace: at a glance
What is ravetools?
RAVE's signal-processing toolkit taught base R graphics to render lit 3D brain meshes.
ravetools supplies the signal processing and now the rendering primitives behind RAVE, a suite for analyzing intracranial electroencephalography. Its earlier releases built out Matlab-equivalent filtering, Welch spectra and wavelet tooling; 0.2.6 changes register entirely, adding plot_mesh_dotcloud and plot_mesh_polygon to draw 3D surface meshes in base R graphics with no rgl dependency, plus arbitrary clipping planes and per-mesh alpha.
What is treespace?
treespace ships once every year or two, and only when CRAN or a user forces it.
treespace explores and compares sets of phylogenetic and transmission trees, including the tree-distance measures used in outbreak reconstruction. Its release history is entirely reactive: five updates across five years, each triggered by a CRAN policy change, an upstream package removal, or a bug someone reported. The most recent is an Rd cross-reference format patch plus a maintainer email change.
ravetools vs treespace: editorial side-by-side
ravetools
0.0ANALYTICS
RAVE's signal-processing toolkit taught base R graphics to render lit 3D brain meshes.
◆ Current state
ravetools supplies the signal processing and now the rendering primitives behind RAVE, a suite for analyzing intracranial electroencephalography. Its earlier releases built out Matlab-equivalent filtering, Welch spectra and wavelet tooling; 0.2.6 changes register entirely, adding plot_mesh_dotcloud and plot_mesh_polygon to draw 3D surface meshes in base R graphics with no rgl dependency, plus arbitrary clipping planes and per-mesh alpha.
◆ Where it's heading
The package is absorbing the visualization layer that RAVE previously delegated to WebGL-backed renderers, and doing it in a way that works in headless and figure-generating contexts. Exporting ensure_mesh3d to coerce mesh3d, ieegio_surface, fs.surface and surf.asc into one canonical form makes ravetools the convergence point for surface formats across the wider toolchain — the sibling ieegio package shipped its own base R plot method within minutes of this release.
◆ Prediction
Expect the base R renderers to pick up the features rgl users would miss next — richer materials, labeling and camera control — and for more of the RAVE stack to route surface handling through ensure_mesh3d.
treespace
0.0ANALYTICS
treespace ships once every year or two, and only when CRAN or a user forces it.
◆ Current state
treespace explores and compares sets of phylogenetic and transmission trees, including the tree-distance measures used in outbreak reconstruction. Its release history is entirely reactive: five updates across five years, each triggered by a CRAN policy change, an upstream package removal, or a bug someone reported. The most recent is an Rd cross-reference format patch plus a maintainer email change.
◆ Where it's heading
The package is stable and lightly staffed rather than abandoned — bugs that affect correctness do get fixed, and CRAN deadlines are met. But the 2023 update is the telling one: rather than vendor or replace adephylo when it faced removal, the maintainers disabled two tree-vector methods and marked the loss as hopefully temporary. Two years on, nothing in the feed indicates they came back.
◆ Prediction
The next entry will most likely be another CRAN-compliance patch, on the pattern of four of the last five releases. Whether the Abouheif and sumDD methods ever return is not something these entries give any signal on.
Alternatives to ravetools and treespace
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either ravetools or treespace.
geodist
geodist stays dependency-free and fast, and warns you when 'cheap' distances stop being honest.
errors
errors keeps making uncertainty print the way each scientific field expects.
CMAQ
CMAQ went global in v5.5, and has been patching that surface ever since.
enpls
enpls has not changed its statistics since 2016 — only its website, twice.
grex
grex is a lookup table with a version number — it ships when the annotation moves.
See all ravetools alternatives → · See all treespace alternatives →
Recent activity from ravetools and treespace
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 2mo agoravetools3D mesh rendering arrives in base R, without rgl ⚡
- 11mo agotreespacetreespace patches Rd cross-references for CRAN
- 1y agoravetoolsravetools 0.2.1
- 2y agotreespacetreespace disables Abouheif and sumDD as adephylo exits CRAN
- 3y agotreespacetreespace fixes vignette build on NA tree names
- 3y agoravetoolsStimulation interpolation and faster quantiles
- 5y agotreespacetreespace fixes dist indexing that broke its tests
- 5y agotreespacetreespace corrects tip label handling in transmission distances
Frequently asked questions
What is the difference between ravetools and treespace?
They serve adjacent needs but don't currently overlap on shipped themes. ravetools and treespace are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is ravetools better than treespace?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. ravetools and treespace are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to ravetools?
Top ravetools alternatives in Analytics are ranked by recent ship velocity. Browse the "ravetools alternatives" section above for the current picks, or visit /alternatives/ravetools-r for the full list with editorial commentary on each.
What are the best alternatives to treespace?
Top treespace alternatives in Analytics are ranked by recent ship velocity. Browse the "treespace alternatives" section above for the current picks, or visit /alternatives/treespace-r for the full list with editorial commentary on each.